Structural Superimposition

Target ID & Chain

Source ID & Chain

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Structural Entry Filters:

Organisms
- Human immunodeficiency virus 1 (2,479)
- Homo sapiens (836)
- Human immunodeficiency virus type 1 (227)
- Macaca mulatta (177)
- Synthetic construct (116)
- Mus musculus (90)
- Human immunodeficiency virus type 1 group m subtype b (isolate bh10) (82)
- Human immunodeficiency virus (80)
- Human immunodeficiency virus type 1 bh10 (79)
- Human immunodeficiency virus type 1 group m subtype b (68)
- Human immunodeficiency virus type 1 (new york-5 isolate) (38)
- Human immunodeficiency virus 2 (33)
- Human immunodeficiency virus type 1 (bru isolate) (26)
- Oryctolagus cuniculus (25)
- Human immunodeficiency virus type 1 group m subtype b (isolate hxb2) (23)
- Human immunodeficiency virus type 1 group m subtype b (isolate ny5) (19)
- Human immunodeficiency virus type 1 (z2/cdc-z34 isolate) (15)
- Lama glama (15)
- Escherichia coli (9)
- Hiv-1 m:b_arv2/sf2 (9)
- Human immunodeficiency virus type 1 (bh5 isolate) (9)
- Saccharomyces cerevisiae (8)
- Human immunodeficiency virus type 1 lw12.3 isolate (8)
- Human immunodeficiency virus type 1 (clone 12) (7)
- Human respiratory syncytial virus (6)
Methods
- X-RAY DIFFRACTION (2,383)
- ELECTRON MICROSCOPY (618)
- SOLUTION NMR (156)
- SOLID-STATE NMR (14)
- NEUTRON DIFFRACTION (6)
- SOLUTION SCATTERING (5)
- ELECTRON CRYSTALLOGRAPHY (3)
Years
- 2026 (111)
- 2025 (177)
- 2024 (121)
- 2023 (192)
- 2022 (193)
- 2021 (142)
- 2020 (185)
- 2019 (170)
- 2018 (184)
- 2017 (96)
- 2016 (142)
- 2015 (105)
- 2014 (128)
- 2013 (195)
- 2012 (143)
- 2011 (78)
- 2010 (95)
- 2009 (43)
- 2008 (90)
- 2007 (65)
- 2006 (74)
- 2005 (36)
- 2004 (61)
- 2003 (27)
- 2002 (45)
Symmetry
- P 21 21 21 (598)
- P 1 (583)
- P 21 21 2 (300)
- C 1 2 1 (268)
- P 1 21 1 (231)
- P 61 (141)
- P 31 (99)
- P 6 (88)
- C 2 2 21 (87)
- P 31 2 1 (78)
- P 41 21 2 (44)
- H 3 (42)
- P 63 (42)
- P 43 21 2 (35)
- P 61 2 2 (34)
- H 3 2 (30)
- P 41 (25)
- I 2 2 2 (16)
- P 32 (16)
- P 2 21 21 (13)
- P 2 2 21 (13)
- P 43 (12)
- P 32 2 1 (11)
- P 3 2 1 (9)
- P 32 1 2 (9)
Ligands
- NAG (661)
- EDO (176)
- ACT (136)
- PO4 (116)
- DMS (75)
- IOD (72)
- 017 (63)
- EPE (57)
- ACY (50)
- IHP (37)
- BME (31)
- T27 (29)
- PEG (26)
- ROC (23)
- NVP (22)
- 3TL (21)
- GTP (17)
- DTP (16)
- DLU (16)
- 2NC (16)
- 478 (15)
- MAN (14)
- MK1 (14)
- MPD (13)
- 0Q4 (13)
Resolution
- <1 (5)
- 1.0 - 1.5 (226)
- 1.5 - 2.0 (817)
- 2.0 - 2.5 (620)
- 2.5 - 3.0 (469)
- 3.0 - 3.5 (237)
- 3.5 - 4.0 (63)
- 4.0 - 4.5 (44)
- 4.5 - 5.0 (11)
- >5 (23)
Modified Residue
- ASN (108)
- CSD (46)
- CAF (29)
- CSO (15)
- MRG (14)
- ABA (12)
- CAS (9)
- PCA (8)
- NLE (7)
- ATM (7)
- TPO (6)
- TYS (6)
- U2X (6)
- CME (6)
- MSE (4)
- GTP (3)
- 2DA (3)
- DOC (3)
- ALY (2)
- OAS (2)
- DDG (2)
- SLZ (2)
- BIF (2)
- OCS (1)
- THR (1)

Search Count: 3,175

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11ON

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Divergent Interfaces And Convergent Outcome In The Structural Basis Of Hiv-2 Vif Antagonism Of Apobec3H

Organism: Pan troglodytes, Homo sapiens, Human immunodeficiency virus 2, Escherichia coli bl21(de3)
Method: ELECTRON MICROSCOPY
Resolution:3.10 Å Release Date: 2026-10-14
Classification: VIRAL PROTEIN
Ligands: ZN

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11ON

Organism: Pan troglodytes, Homo sapiens, Human immunodeficiency virus 2, Escherichia coli bl21(de3)
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-14
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

43KN

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Len-Bound Hiv-1 Capsid Lattice Within Vlps Treated With Pfo, C6 Symmetry

Organism: Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Classification: VIRAL PROTEIN

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43KN

Organism: Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07

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43KO

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Len-Unbound Hiv-1 Capsid Lattice Within Vlps Treated With Pfo, C6 Symmetry

Organism: Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Classification: VIRAL PROTEIN

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43KO

Organism: Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07

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9XQH

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Len-Bound Hiv-1 Capsid Lattice Within Intact Vlps

Organism: Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Classification: VIRAL PROTEIN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9XQH

Organism: Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07

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9YIW

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Pc94-A.15 Fab In Complex With Bg505 Sosip Trimer And Rm20A3 Fab

Organism: Homo sapiens, Macaca mulatta, Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Resolution:3.60 Å Release Date: 2026-10-07
Classification: VIRAL PROTEIN
Ligands: NAG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9YIW

Organism: Homo sapiens, Macaca mulatta, Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Ligands: NAG

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9YJ0

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Pc94-A.16 Fab In Complex With P94_V18_C046 Chimera Ds-Sosip Trimer And Rm20A3 Fab

Organism: Macaca mulatta, Human immunodeficiency virus 1, Homo sapiens
Method: ELECTRON MICROSCOPY
Resolution:3.00 Å Release Date: 2026-10-07
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Ligands: NAG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9YJ0

Organism: Macaca mulatta, Human immunodeficiency virus 1, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Ligands: NAG

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9YJ1

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Pc94-A.31 Fab In Complex With Bg505 Sosip Trimer And Rm20A3 Fab

Organism: Macaca mulatta, Human immunodeficiency virus 1, Homo sapiens
Method: ELECTRON MICROSCOPY
Resolution:3.10 Å Release Date: 2026-10-07
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Ligands: NAG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9YJ1

Organism: Macaca mulatta, Human immunodeficiency virus 1, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Ligands: NAG

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9YJ2

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Pc94-A.30 Fab In Complex With Bg505 Sosip Trimer And Rm20A3 Fab

Organism: Homo sapiens, Macaca mulatta, Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Resolution:3.10 Å Release Date: 2026-10-07
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Ligands: NAG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9YJ2

Organism: Homo sapiens, Macaca mulatta, Human immunodeficiency virus 1
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Ligands: NAG

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9YJ3

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Pc94-A.27 Fab In Complex With P94_V18_C046 Chimera Ds-Sosip Trimer And Rm20A3 Fab

Organism: Homo sapiens, Human immunodeficiency virus 1, Macaca mulatta
Method: ELECTRON MICROSCOPY
Resolution:3.00 Å Release Date: 2026-10-07
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Ligands: NAG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9YJ3

Organism: Homo sapiens, Human immunodeficiency virus 1, Macaca mulatta
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-07
Ligands: NAG

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36BT

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Hiv-1 Reverse Transcriptase In Complex With Dnaddg Aptamer And Unincorporated Isl-Triphosphate

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Classification: VIRAL PROTEIN
Ligands: 6FN, MG

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36BT

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Ligands: 6FN, MG

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36CP

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Hiv-1 Reverse Transcriptase In Complex With Dna Aptamer And Incorporated Datp

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Classification: VIRAL PROTEIN
Ligands: POP, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

36CP

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Ligands: POP, MG

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36CW

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Hiv-1 Reverse Transcriptase (F227C) In Complex With Dnaddg Aptamer And Unincorporated Isl-Triphosphate

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Classification: VIRAL PROTEIN
Ligands: 6FN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

36CW

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Ligands: 6FN, MG

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36DK

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Hiv-1 Reverse Transcriptase (F227C) In Complex With Dna Aptamer And Incorporated Datp

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Classification: VIRAL PROTEIN
Ligands: POP, MG

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36DK

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Ligands: POP, MG

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36DN

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Hiv-1 Reverse Transcriptase (F227C) In Complex With Dnaddg Aptamer

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Classification: VIRAL PROTEIN
Ligands: DDG

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36DN

Organism: Human immunodeficiency virus 1, Synthetic construct
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-02
Ligands: DDG

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9NPM

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Composite Map Of Three Pairs Of Dimeric Vrc36 Fabs Bound To Hiv-1 Bg505.T332N Ds-Sosip.664 Env Trimer

Organism: Human immunodeficiency virus 1, Homo sapiens
Method: ELECTRON MICROSCOPY
Resolution:3.59 Å Release Date: 2026-08-19
Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Ligands: NAG

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9NPM

Organism: Human immunodeficiency virus 1, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-08-19
Ligands: NAG

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9S7M

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Hiv-1 Capsid (M-Group) - Native In Complex With Jw3-093

Organism: Human immunodeficiency virus type 1 (new york-5 isolate)
Method: X-RAY DIFFRACTION
Resolution:2.60 Å Release Date: 2026-08-19
Classification: VIRAL PROTEIN
Ligands: IOD, CL, BME, A1JMD

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9S7M

Organism: Human immunodeficiency virus type 1 (new york-5 isolate)
Method: X-RAY DIFFRACTION
Release Date: 2026-08-19
Ligands: IOD, CL, BME, A1JMD

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9S6J

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Hiv-1 Capsid (M-Group) - Cpsf6

Organism: Human immunodeficiency virus type 1 (new york-5 isolate), Homo sapiens
Method: X-RAY DIFFRACTION
Resolution:2.40 Å Release Date: 2026-08-12
Classification: VIRAL PROTEIN
Ligands: IOD, CL, GOL

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9S6J

Organism: Human immunodeficiency virus type 1 (new york-5 isolate), Homo sapiens
Method: X-RAY DIFFRACTION
Release Date: 2026-08-12
Ligands: IOD, CL, GOL

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9S6N

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Hiv-1 Capsid (M-Group) - Nup153

Organism: Human immunodeficiency virus type 1 (new york-5 isolate), Homo sapiens
Method: X-RAY DIFFRACTION
Resolution:2.60 Å Release Date: 2026-08-12
Classification: VIRAL PROTEIN
Ligands: IOD, CL

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9S6N

Organism: Human immunodeficiency virus type 1 (new york-5 isolate), Homo sapiens
Method: X-RAY DIFFRACTION
Release Date: 2026-08-12
Ligands: IOD, CL

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9S6O

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Hiv-1 Capsid (M-Group) - Native In Complex With Jw3-076

Organism: Human immunodeficiency virus type 1 (new york-5 isolate)
Method: X-RAY DIFFRACTION
Resolution:2.09 Å Release Date: 2026-08-12
Classification: VIRAL PROTEIN
Ligands: A1JL3, IOD, CL, BME

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9S6O

Organism: Human immunodeficiency virus type 1 (new york-5 isolate)
Method: X-RAY DIFFRACTION
Release Date: 2026-08-12
Ligands: A1JL3, IOD, CL, BME

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9S6V

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Hiv-1 Capsid (M-Group) - Native In Complex With Jw3-094

Organism: Human immunodeficiency virus type 1 (new york-5 isolate)
Method: X-RAY DIFFRACTION
Resolution:2.36 Å Release Date: 2026-08-12
Classification: VIRAL PROTEIN
Ligands: IOD, CL, BME, A1JL4

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9S6V

Organism: Human immunodeficiency virus type 1 (new york-5 isolate)
Method: X-RAY DIFFRACTION
Release Date: 2026-08-12
Ligands: IOD, CL, BME, A1JL4

Structural Superimposition 3D-Fold Search Interaction Explorer

Protein Functional Filters:

Enzyme
- Hydrolases (1,640)
- Transferases (1,502)
- Isomerases (22)
- Lyases (2)
- Translocases (1)
Uniprots
- P03366 (384)
- P03367 (198)
- Q2N0S6 (193)
- P12497 (159)
- P04585 (137)
- P61769 (122)
- Q76353 (104)
- B6DRA0 (77)
- P12493 (74)
- P04587 (61)
- Q2N0S5 (59)
- Q8ULI9 (54)
- P01730 (51)
- A0A0M3KKW9 (51)
- P03369 (50)
- Q5RZ08 (39)
- O38732 (30)
- Q2N0S7 (29)
- P04578 (29)
- P03368 (28)
- Q72497 (26)
- Q72498 (25)
- M1E1E4 (22)
- P04584 (22)
- Q90VU7 (21)
PFAM
- PF00077 (852)
- PF00516 (464)
- PF00075 (413)
- PF06817 (399)
- PF00078 (399)
- PF06815 (398)
- PF00517 (307)
- PF00665 (253)
- PF19317 (224)
- PF07654 (194)
- PF00607 (178)
- PF00129 (122)
- PF00047 (54)
- PF07686 (52)
- PF05790 (50)
- PF02022 (37)
- PF00552 (37)
- PF00540 (34)
- PF00469 (30)
- PF00160 (22)
- PF01217 (20)
- PF00928 (20)
- PF01602 (20)
- PF00098 (19)
- PF00025 (17)

Structural Entry Filters:

Search Count: 3,175

Protein Functional Filters:

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