| Project Accession: | IBIAP_1000000029 |
| Title: | 3D medical imaging data in head and neck cancer patients |
| Representative Image: |  |
| Description: | The comprehensive dataset specifically includes three-dimensional (3D) medical imaging data acquired from head and neck cancer patients. The primary imaging modality utilized for this collection is Computed Tomography (CT) scanning. CT scans provide detailed cross-sectional images essential for accurate diagnosis, tumor delineation, treatment planning (such as radiation therapy), and monitoring of therapeutic response in oncology. The dataset aims to serve as a high-quality resource for researchers and developers working on projects such as automated tumor segmentation, radiomics analysis, deep learning model training for prognosis prediction, and personalized treatment strategies within the domain of head and neck oncology. The detailed 3D structure captured by the CT scans allows for a more complete and spatial understanding of the disease, moving beyond traditional 2D assessments. |
| Publications: | N/A |
| Associated Codes (URL only): | N/A |
| Funding agency: | N/A |
| Grant Number: | N/A |
| Ethics Statement: | N/A |
| Any Other Information : | N/A |
| Additional File: | N/A |
| Acknowledgments: | The authors acknowledge the Department of Oncoradiology, AIIMS New Delhi, for technical and clinical support. |
| Sr.No | First name | Last name | Organization | Designation | |
|---|---|---|---|---|---|
| 1 | Amit | Gupta | amit.aiims2014@gmail.com | NCI Jhajjar, All India Institute of Medical Sciences (AIIMS), New Delhi, India | Co-Principal Investigator |
| 2 | Krithika | Rangarajan | krithikarangarajan@aiims.edu | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Principal Investigator |
| 3 | Hema | Malhotra | hemamalhotraaiims.2020@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Program Manager |
| 4 | Ashish | Rastogi | ashishrastogi.3150@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Data Analyst |
| 5 | Rohit | Shah | rohitaiims.2024@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | D.E.O |
| Study Accession: | CTS_1000000034 |
| Title: | 3D medical imaging data in head and neck cancer patients |
| Imaging Type: | Computed Tomography (CT) |
| Imaging Sub-type: | Diagnostic Radiology |
| Summary: | The comprehensive dataset specifically includes three-dimensional (3D) medical imaging data acquired from head and neck cancer patients. The primary imaging modality utilized for this collection is Computed Tomography (CT) scanning. CT scans provide detailed cross-sectional images essential for accurate diagnosis, tumor delineation, treatment planning (such as radiation therapy), and monitoring of therapeutic response in oncology. The dataset aims to serve as a high-quality resource for researchers and developers working on projects such as automated tumor segmentation, radiomics analysis, deep learning model training for prognosis prediction, and personalized treatment strategies within the domain of head and neck oncology. The detailed 3D structure captured by the CT scans allows for a more complete and spatial understanding of the disease, moving beyond traditional 2D assessments. |
| Keywords: | Laryngeal cancer; Head and Neck cancer; CT scan |
| Additional / Any Other Information: | N/A |
| Release Date: | April 29, 2026 |
| Access Licence Type: | Open Access |
Table 1. The sample types registered under this study are as follows:
Table 2. The samples registered under this study are as follows:
| Sample Type ID | Organism | Taxon ID | Biological Entity | Laterality | Source Tissue | Source Cell/Cell-line | Cell Organelle |
|---|---|---|---|---|---|---|---|
| CTSMT_10000000064 | Homo sapiens | 9606 | Multiple body regions | Both | N/A | N/A | N/A |
Table 2. The samples registered under this study are as follows:
| Sample Type ID | Sample ID | Subject Type | Clinical Indication (Diagnosis) | ICD-11 Code (patient health condition) | Tumor Site | Image category/label | De-identified Patient ID | Procedure | Clinical Information |
|---|---|---|---|---|---|---|---|---|---|
| CTSMT_10000000064 | CTSM_10000297988 | Head and neck cancer | Suspicious of malignancy | N/A | Unkown primary site | N/A | Patient_353 | CECT of Neck-Chest | case of Ewings sarcoma left paravertevral region in cervical region. |
| CTSMT_10000000064 | CTSM_10000297995 | Head and neck cancer | Known case of cancer - Followup | 2C23 | Larynx- supraglottis | N/A | Patient_360 | CECT of Face-Neck-Chest | c.o ca supraglottis with lung mets. |
| CTSMT_10000000064 | CTSM_10000298021 | Head and neck cancer | Known case of cancer - Followup | 2D04 | orbit (right side) | N/A | Patient_386 | CECT of Head-Face-Neck-Chest | SCC in right infraorbital region; planned for WLE |
| CTSMT_10000000064 | CTSM_10000298008 | Head and neck cancer | Known case of cancer - Followup | 2B62 | Oral cavity- lateral border of tongue | N/A | Patient_373 | CECT of Head-Face-Neck-Chest | C/o irregular ulcerative growth along left lateral border of tongue (approx 1 x 1cms on local examination). |
| CTSMT_10000000064 | CTSM_10000297957 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity (right buccal mocosa) | N/A | Patient_322 | CECT of Face-Neck-Chest | K/C/O right buccal mucosa CA |
| CTSMT_10000000064 | CTSM_10000298173 | Head and neck cancer | Known case of cancer - Followup | 2B67 | Parotid gland | N/A | Patient_538 | CECT of Face-Neck-Chest | Recurrent Ca Parotid, post surgery and RT |
| CTSMT_10000000064 | CTSM_10000298182 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity- left buccal mucosa | N/A | Patient_547 | CECT of Face-Neck-Chest | Post operative carcinoma left buccal mucosa, post RT |
| CTSMT_10000000064 | CTSM_10000298188 | Head and neck cancer | Suspicious of malignancy | 2B66, 2B6A,2C23 | Oral cavity; Oropharynx; Larynx | N/A | Patient_553 | CECT of Face-Neck-Chest | k/c/o ca oropharynx post NACT for response assessment |
| CTSMT_10000000064 | CTSM_10000298198 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity- lower alveolus | N/A | Patient_563 | CECT of Face-Neck-Chest | Ca right lower alveolus |
| CTSMT_10000000064 | CTSM_10000298207 | Head and neck cancer | Known case of cancer - Followup | N/A | Lymphnodes | N/A | Patient_572 | NCCT of Face | K/c/o extranodal T cell /NK cell lymphoma involving nasal floor with composite defect in palate with nasopalatal fistula |
| CTSMT_10000000064 | CTSM_10000298213 | Head and neck cancer | Known case of cancer - Followup | 2B62 | Oral cavity (left tongue) | N/A | Patient_578 | CECT of Face-Neck-Chest | c/o CA tongue, cT4aN0M0. Operated in 2024, Post definitive CT/RT - on surveillance |
| CTSMT_10000000064 | CTSM_10000298219 | Head and neck cancer | Known case of cancer - Followup | 2A81 | Lymphnodes | N/A | Patient_584 | CECT of Neck, Chest, Abdomen & Pelvis. | K/C/O DLBCL of right testis |
| CTSMT_10000000064 | CTSM_10000298225 | Head and neck cancer | Known case of cancer - Followup | 2C23 | Larynx - trans glottis with and recurrent disease | N/A | Patient_590 | CECT of Face-Neck-Chest | C/o CA trans glottis -post CTRT |
| CTSMT_10000000064 | CTSM_10000298234 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity (Right lower alveolous) with and recurrent disease | N/A | Patient_599 | CECT of Face-Neck-Chest | C/o Right lower alveolus ( c T2 N2 Mo) |
| CTSMT_10000000064 | CTSM_10000298246 | Head and neck cancer | Known case of cancer - Followup | 2D10 | Thyroid with and recurrent disease | N/A | Patient_611 | CECT of Face-Neck-Chest | K/c/o PTC - Post op - recurrence twice - (second recurrence)- Previously Tracheostomy done in 2013 |
| CTSMT_10000000064 | CTSM_10000298167 | Head and neck cancer | Known case of cancer - Followup | 2D10 | Thyroid | N/A | Patient_532 | CECT of Neck, Chest | Known case of papillary cell type CA thyroid, to assess extend of disease |
| CTSMT_10000000064 | CTSM_10000298031 | Head and neck cancer | Known case of cancer - Followup | 2B65 | Oral cavity (Hard palate) | N/A | Patient_396 | CECT of Face-Neck-Chest | case of ca Hard palate, baseline evaluation. |
| CTSMT_10000000064 | CTSM_10000298034 | Head and neck cancer | Suspicious of malignancy | 2B61 | Oropharynx (base of tongue- left side, tongue muscles and left pharyngeal wall) | N/A | Patient_399 | CECT of Face-Neck-Chest | Ca BOT (cT4aNoMo), post RT. |
| CTSMT_10000000064 | CTSM_10000298037 | Head and neck cancer | Known case of cancer - Followup | 2B62 | Oral cavity- lateral border of tongue | N/A | Patient_402 | CECT of Face-Neck-Chest | Patient is a f/u/c/o CA lateral border of tongue. S/P WLE + MND. Patient now has left RMT lesion ? Nature |
| CTSMT_10000000064 | CTSM_10000298041 | Head and neck cancer | Suspicious of malignancy | 2C23 | Larynx (glottis) | N/A | Patient_406 | CECT of Face-Neck | Ca glottis; cT1bN0M0; status post RT. Clinical exam reveals plaque in right vocal cord |
Table 3. The experiment types registered under this study are as follows:
| Experiment Type ID | Instrument Name | Instrument Type | Manufacturer | Model |
|---|---|---|---|---|
| CTET_10000000030 | CT-Scan Machine | Multisclice | Siemens Healthineers | Somatom Definition Edge |
| Experimental Design Summary (CTET_10000000030) |
|---|
| The CT scans included in this dataset were performed for patients diagnosed with head and neck cancer at our institute. The CT images include various body regions including face, neck, chest, abdomen and pelvis. These scans were performed at various stages of management of the cancer, including pre-treatment scans, post-radiotherapy response assessment scans, and post-operative follow-up scans. All the scans were double reported by two radiologists - first, a resident radiologist (3-6 years of experience), and second reading by a specialist onco-radiologist (more than 10 years of experience). |
| Acquired Images Annotation Description (CTET_10000000030) |
|---|
| Each CT scan in the dataset is accompanied by the summary of main findings in the corresponding radiology reports. All the scans were double reported by two radiologists - first, a resident radiologist (3-6 years of experience), and second reading by a specialist onco-radiologist (more than 10 years of experience). The findings from these reports provided in this dataset, are robust scan-level labels for each of the CT exams included in the dataset. Image and pixel-level annotations are not included in this dataset. |
Table 4. The experiments registered under this study are as follows:
| Sample ID | Experiment Type ID | Experiment ID | Image type (Original / Derived / Unknown) | Any Other Information | Image plane | Slice Progression Direction | Slice thickness (in mm) | Image Count | Contrast / Bolus ingredient | Image file format | Image modality type (contrast-enhanced or non-contrast) | Implants or devices visible in scan (yes/no) | Motion artifacts noted (yes/no) | Type of contrast agent | Use of contrast agent (yes/no) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CTSM_10000298029 | CTET_10000000030 | CTE_10000270556 | Derived | N/A | Axial | superio-inferior | 1 | 922 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298031 | CTET_10000000030 | CTE_10000270558 | Derived | N/A | Axial | superio-inferior | 1 | 947 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298038 | CTET_10000000030 | CTE_10000270565 | Derived | N/A | Axial | superio-inferior | 1 | 805 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298039 | CTET_10000000030 | CTE_10000270566 | Derived | N/A | Axial | superio-inferior | 1 | 736 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298041 | CTET_10000000030 | CTE_10000270568 | Derived | N/A | Axial | superio-inferior | 1 | 392 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298045 | CTET_10000000030 | CTE_10000270572 | Derived | N/A | Axial | superio-inferior | 1 | 727 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298047 | CTET_10000000030 | CTE_10000270574 | Derived | N/A | Axial | superio-inferior | 1 | 459 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298050 | CTET_10000000030 | CTE_10000270577 | Derived | N/A | Axial | superio-inferior | 1 | 1013 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298052 | CTET_10000000030 | CTE_10000270579 | Derived | N/A | Axial | superio-inferior | 1 | 606 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298055 | CTET_10000000030 | CTE_10000270582 | Derived | N/A | Axial | superio-inferior | 1 | 765 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298056 | CTET_10000000030 | CTE_10000270583 | Derived | N/A | Axial | superio-inferior | 1 | 819 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298057 | CTET_10000000030 | CTE_10000270584 | Derived | N/A | Axial | superio-inferior | 1 | 827 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298061 | CTET_10000000030 | CTE_10000270588 | Derived | N/A | Axial | superio-inferior | 1 | 768 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298062 | CTET_10000000030 | CTE_10000270589 | Derived | N/A | Axial | superio-inferior | 1 | 810 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298064 | CTET_10000000030 | CTE_10000270591 | Derived | N/A | Axial | superio-inferior | 1 | 763 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298066 | CTET_10000000030 | CTE_10000270593 | Derived | N/A | Axial | superio-inferior | 1 | 719 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298073 | CTET_10000000030 | CTE_10000270600 | Derived | N/A | Axial | superio-inferior | 1 | 808 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298075 | CTET_10000000030 | CTE_10000270602 | Derived | N/A | Axial | superio-inferior | 1 | 956 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298078 | CTET_10000000030 | CTE_10000270605 | Derived | N/A | Axial | superio-inferior | 1 | 39 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298080 | CTET_10000000030 | CTE_10000270607 | Derived | N/A | Axial | superio-inferior | 1 | 762 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| Experiment ID | Image File Name (with path) | Image Preview | Image Size |
|---|---|---|---|
| CTE_10000270600 | HNC_data/Patient_438.zip |  Download Image |
218M |
| CTE_10000270602 | HNC_data/Patient_440.zip | Download Image |
252M |
| CTE_10000270604 | HNC_data/Patient_442.zip | Download Image |
96M |
| CTE_10000270605 | HNC_data/Patient_443.zip | Download Image |
8.4M |
| CTE_10000270607 | HNC_data/Patient_445.zip | Download Image |
200M |
| CTE_10000270608 | HNC_data/Patient_446.zip | Download Image |
217M |
| CTE_10000270609 | HNC_data/Patient_447.zip | Download Image |
167M |
| CTE_10000270610 | HNC_data/Patient_448.zip | Download Image |
165M |
| CTE_10000270611 | HNC_data/Patient_449.zip | Download Image |
206M |
| CTE_10000270612 | HNC_data/Patient_450.zip | Download Image |
199M |