| Project Accession: | IBIAP_1000000029 |
| Title: | 3D medical imaging data in head and neck cancer patients |
| Representative Image: |  |
| Description: | The comprehensive dataset specifically includes three-dimensional (3D) medical imaging data acquired from head and neck cancer patients. The primary imaging modality utilized for this collection is Computed Tomography (CT) scanning. CT scans provide detailed cross-sectional images essential for accurate diagnosis, tumor delineation, treatment planning (such as radiation therapy), and monitoring of therapeutic response in oncology. The dataset aims to serve as a high-quality resource for researchers and developers working on projects such as automated tumor segmentation, radiomics analysis, deep learning model training for prognosis prediction, and personalized treatment strategies within the domain of head and neck oncology. The detailed 3D structure captured by the CT scans allows for a more complete and spatial understanding of the disease, moving beyond traditional 2D assessments. |
| Publications: | N/A |
| Associated Codes (URL only): | N/A |
| Funding agency: | N/A |
| Grant Number: | N/A |
| Ethics Statement: | N/A |
| Any Other Information : | N/A |
| Additional File: | N/A |
| Acknowledgments: | The authors acknowledge the Department of Oncoradiology, AIIMS New Delhi, for technical and clinical support. |
| Sr.No | First name | Last name | Organization | Designation | |
|---|---|---|---|---|---|
| 1 | Amit | Gupta | amit.aiims2014@gmail.com | NCI Jhajjar, All India Institute of Medical Sciences (AIIMS), New Delhi, India | Co-Principal Investigator |
| 2 | Krithika | Rangarajan | krithikarangarajan@aiims.edu | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Principal Investigator |
| 3 | Hema | Malhotra | hemamalhotraaiims.2020@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Program Manager |
| 4 | Ashish | Rastogi | ashishrastogi.3150@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Data Analyst |
| 5 | Rohit | Shah | rohitaiims.2024@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | D.E.O |
| Study Accession: | CTS_1000000034 |
| Title: | 3D medical imaging data in head and neck cancer patients |
| Imaging Type: | Computed Tomography (CT) |
| Imaging Sub-type: | Diagnostic Radiology |
| Summary: | The comprehensive dataset specifically includes three-dimensional (3D) medical imaging data acquired from head and neck cancer patients. The primary imaging modality utilized for this collection is Computed Tomography (CT) scanning. CT scans provide detailed cross-sectional images essential for accurate diagnosis, tumor delineation, treatment planning (such as radiation therapy), and monitoring of therapeutic response in oncology. The dataset aims to serve as a high-quality resource for researchers and developers working on projects such as automated tumor segmentation, radiomics analysis, deep learning model training for prognosis prediction, and personalized treatment strategies within the domain of head and neck oncology. The detailed 3D structure captured by the CT scans allows for a more complete and spatial understanding of the disease, moving beyond traditional 2D assessments. |
| Keywords: | Laryngeal cancer; Head and Neck cancer; CT scan |
| Additional / Any Other Information: | N/A |
| Release Date: | April 29, 2026 |
| Access Licence Type: | Open Access |
Table 1. The sample types registered under this study are as follows:
Table 2. The samples registered under this study are as follows:
| Sample Type ID | Organism | Taxon ID | Biological Entity | Laterality | Source Tissue | Source Cell/Cell-line | Cell Organelle |
|---|---|---|---|---|---|---|---|
| CTSMT_10000000064 | Homo sapiens | 9606 | Multiple body regions | Both | N/A | N/A | N/A |
Table 2. The samples registered under this study are as follows:
| Sample Type ID | Sample ID | Subject Type | Clinical Indication (Diagnosis) | ICD-11 Code (patient health condition) | Tumor Site | Image category/label | De-identified Patient ID | Procedure | Clinical Information |
|---|---|---|---|---|---|---|---|---|---|
| CTSMT_10000000064 | CTSM_10000298489 | Head and neck cancer | Known case of cancer - Followup | 2C23 | Larynx- trans glottis | N/A | Patient_854 | CECT of Face-Neck-Chest | Carcinoma transglottic larynx, Post tracheostomy, post TL |
| CTSMT_10000000064 | CTSM_10000298495 | Head and neck cancer | Known case of cancer - Followup | 2B6A | Oropharynx | N/A | Patient_860 | CECT of Face-Neck-Chest | C/o ca oropharynx - radical CTRT, response assessment |
| CTSMT_10000000064 | CTSM_10000298498 | Head and neck cancer | Known case of cancer - Followup | 2C23 | Larynx- Supraglottis | N/A | Patient_863 | CECT of Face-Neck-Chest | supraglottis tumor post radical CTRT, for response assessment. |
| CTSMT_10000000064 | CTSM_10000298504 | Head and neck cancer | Known case of cancer - Followup | 2C30 | Lymphnodes | N/A | Patient_869 | CECT of Face & Neck. | follow up of Hodgkin Lymphoma |
| CTSMT_10000000064 | CTSM_10000298507 | Head and neck cancer | Known case of cancer - Followup | 2B65 | Oropharynx (soft palate) | N/A | Patient_872 | CECT of Face & Neck. | CA soft palate T2N0M0 post RT (Jan 2025) |
| CTSMT_10000000064 | CTSM_10000298513 | Head and neck cancer | Known case of cancer - Followup | 2B62 | Oral cavity (tongue left lateral border) with and recurrent disease | N/A | Patient_878 | CECT of Face-Neck-Chest | K/C/O Ca left lateral border tongue Ca s/p surgery and RT (LD- 30/7/2024). |
| CTSMT_10000000064 | CTSM_10000298515 | Head and neck cancer | Known case of cancer - Followup | 2B6A | Oropharynx with and recurrent disease | N/A | Patient_880 | CECT of Face-Neck-Chest-Abdomen | F/U/C/O oropharynx |
| CTSMT_10000000064 | CTSM_10000298517 | Head and neck cancer | Known case of cancer - Followup | N/A | Unkown primary site | N/A | Patient_882 | CECT of Neck, Chest, Abdomen & Pelvis. | K/C/O AML on D107 induction. To look for septic focus |
| CTSMT_10000000064 | CTSM_10000298518 | Head and neck cancer | Known case of cancer - Followup | 2B65 | Oral cavity (left sided hard palate) with and recurrent disease | N/A | Patient_883 | CECT of Head, face & Neck with chest. | K/C/O left sided hard palate mass (Adenocarinoma) s/p post op (23 oct 2024) and Post RT. |
| CTSMT_10000000064 | CTSM_10000298524 | Head and neck cancer | Known case of cancer - Followup | 2B62 | Oral cavity- lateral border of tongue | N/A | Patient_889 | CECT of Head, Face-Neck-Chest | Ca lateral border of tongue - post-op, post-RT |
| CTSMT_10000000064 | CTSM_10000298525 | Head and neck cancer | Known case of cancer - Followup | 2C23 | Larynx- glottis (left true vocal cords) | N/A | Patient_890 | CECT of Face-Neck-Chest | C/o ca glottis cT1b N0M0, to look for present disease status |
| CTSMT_10000000064 | CTSM_10000298526 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity (right buccal mucosa) | N/A | Patient_891 | CECT of Face-Neck-Chest | Ca right buccal mucosa [ T4b N1 M0 ] |
| CTSMT_10000000064 | CTSM_10000298533 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity | N/A | Patient_898 | CECT of Face-Neck-Chest | CA BOT post def CT RT in Jan 2025 Outside scan not brought for comparison |
| CTSMT_10000000064 | CTSM_10000298536 | Head and neck cancer | Known case of cancer - Followup | 2B6A | Oropharynx | N/A | Patient_901 | CECT of Face-Neck-Chest | Ca oropharynx - post radical CTRT - completed in April 2023 - no fresh |
| CTSMT_10000000064 | CTSM_10000298542 | Head and neck cancer | Suspicious of malignancy | 2C31 | Scalp | N/A | Patient_907 | CECT of Head - Face -Chest | gorlin syndrome with Scalp BCC. |
| CTSMT_10000000064 | CTSM_10000298545 | Head and neck cancer | Known case of cancer - Followup | 2B6D | Hypopharynx | N/A | Patient_910 | CECT of Face-Neck-Chest | K/c/o CA hypopharynx. Post palliative RT |
| CTSMT_10000000064 | CTSM_10000298550 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity | N/A | Patient_915 | CECT of Face & Neck and chest | Carcinoma left lateral border tongue PORT - last dose - 11-6-24. |
| CTSMT_10000000064 | CTSM_10000298556 | Head and neck cancer | Known case of cancer - Followup | 2B6C | Hypopharynx (Left pyriform sinus) | N/A | Patient_921 | CECT of Face-Neck-Chest | C/o ca left pyriform sinus, cT2N1MO post radical CTRT |
| CTSMT_10000000064 | CTSM_10000298558 | Head and neck cancer | Suspicious of malignancy | 2B69 | Oropharynx (Right Tonsil) | N/A | Patient_923 | CECT of Face-Neck-Chest | CA right tonsil post radical CT RT |
| CTSMT_10000000064 | CTSM_10000298559 | Head and neck cancer | Known case of cancer - Followup | 2B6A | Oropharynxwith and recurrent disease | N/A | Patient_924 | CECT of Face, Neck, Chest, Abdomen & Pelvis. | K/C/O Ca oropharynx on Cetuximab. For response assessment |
Table 3. The experiment types registered under this study are as follows:
| Experiment Type ID | Instrument Name | Instrument Type | Manufacturer | Model |
|---|---|---|---|---|
| CTET_10000000030 | CT-Scan Machine | Multisclice | Siemens Healthineers | Somatom Definition Edge |
| Experimental Design Summary (CTET_10000000030) |
|---|
| The CT scans included in this dataset were performed for patients diagnosed with head and neck cancer at our institute. The CT images include various body regions including face, neck, chest, abdomen and pelvis. These scans were performed at various stages of management of the cancer, including pre-treatment scans, post-radiotherapy response assessment scans, and post-operative follow-up scans. All the scans were double reported by two radiologists - first, a resident radiologist (3-6 years of experience), and second reading by a specialist onco-radiologist (more than 10 years of experience). |
| Acquired Images Annotation Description (CTET_10000000030) |
|---|
| Each CT scan in the dataset is accompanied by the summary of main findings in the corresponding radiology reports. All the scans were double reported by two radiologists - first, a resident radiologist (3-6 years of experience), and second reading by a specialist onco-radiologist (more than 10 years of experience). The findings from these reports provided in this dataset, are robust scan-level labels for each of the CT exams included in the dataset. Image and pixel-level annotations are not included in this dataset. |
Table 4. The experiments registered under this study are as follows:
| Sample ID | Experiment Type ID | Experiment ID | Image type (Original / Derived / Unknown) | Any Other Information | Image plane | Slice Progression Direction | Slice thickness (in mm) | Image Count | Contrast / Bolus ingredient | Image file format | Image modality type (contrast-enhanced or non-contrast) | Implants or devices visible in scan (yes/no) | Motion artifacts noted (yes/no) | Type of contrast agent | Use of contrast agent (yes/no) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CTSM_10000297776 | CTET_10000000030 | CTE_10000270303 | Derived | N/A | Axial | superio-inferior | 1 | 389 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297778 | CTET_10000000030 | CTE_10000270305 | Derived | N/A | Axial | superio-inferior | 1 | 440 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297779 | CTET_10000000030 | CTE_10000270306 | Derived | N/A | Axial | superio-inferior | 1 | 870 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297781 | CTET_10000000030 | CTE_10000270308 | Derived | N/A | Axial | superio-inferior | 1 | 1033 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297784 | CTET_10000000030 | CTE_10000270311 | Derived | N/A | Axial | superio-inferior | 1 | 806 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297785 | CTET_10000000030 | CTE_10000270312 | Derived | N/A | Axial | superio-inferior | 1 | 831 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297786 | CTET_10000000030 | CTE_10000270313 | Derived | N/A | Axial | superio-inferior | 1 | 1150 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297787 | CTET_10000000030 | CTE_10000270314 | Derived | N/A | Axial | superio-inferior | 1 | 721 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297789 | CTET_10000000030 | CTE_10000270316 | Derived | N/A | Axial | superio-inferior | 1 | 729 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297790 | CTET_10000000030 | CTE_10000270317 | Derived | N/A | Axial | superio-inferior | 1 | 792 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297791 | CTET_10000000030 | CTE_10000270318 | Derived | N/A | Axial | superio-inferior | 1 | 725 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297793 | CTET_10000000030 | CTE_10000270320 | Derived | N/A | Axial | superio-inferior | 1 | 749 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297794 | CTET_10000000030 | CTE_10000270321 | Derived | N/A | Axial | superio-inferior | 1 | 923 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298382 | CTET_10000000030 | CTE_10000270909 | Derived | N/A | Axial | superio-inferior | 1 | 748 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298383 | CTET_10000000030 | CTE_10000270910 | Derived | N/A | Axial | superio-inferior | 1 | 377 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298384 | CTET_10000000030 | CTE_10000270911 | Derived | N/A | Axial | superio-inferior | 1 | 387 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298385 | CTET_10000000030 | CTE_10000270912 | Derived | N/A | Axial | superio-inferior | 1 | 350 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298386 | CTET_10000000030 | CTE_10000270913 | Derived | N/A | Axial | superio-inferior | 1 | 550 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298387 | CTET_10000000030 | CTE_10000270914 | Derived | N/A | Axial | superio-inferior | 1 | 370 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298389 | CTET_10000000030 | CTE_10000270916 | Derived | N/A | Axial | superio-inferior | 1 | 727 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| Experiment ID | Image File Name (with path) | Image Preview | Image Size |
|---|---|---|---|
| CTE_10000270426 | HNC_data/Patient_264.zip |  Download Image |
163M |
| CTE_10000270427 | HNC_data/Patient_265.zip | Download Image |
176M |
| CTE_10000270428 | HNC_data/Patient_266.zip | Download Image |
72M |
| CTE_10000270429 | HNC_data/Patient_267.zip | Download Image |
289M |
| CTE_10000270430 | HNC_data/Patient_268.zip | Download Image |
114M |
| CTE_10000270431 | HNC_data/Patient_269.zip | Download Image |
118M |
| CTE_10000270432 | HNC_data/Patient_270.zip | Download Image |
155M |
| CTE_10000270433 | HNC_data/Patient_271.zip | Download Image |
161M |
| CTE_10000270434 | HNC_data/Patient_272.zip | Download Image |
173M |
| CTE_10000270435 | HNC_data/Patient_273.zip | Download Image |
273M |