| Project Accession: | IBIAP_1000000029 |
| Title: | 3D medical imaging data in head and neck cancer patients |
| Representative Image: |  |
| Description: | The comprehensive dataset specifically includes three-dimensional (3D) medical imaging data acquired from head and neck cancer patients. The primary imaging modality utilized for this collection is Computed Tomography (CT) scanning. CT scans provide detailed cross-sectional images essential for accurate diagnosis, tumor delineation, treatment planning (such as radiation therapy), and monitoring of therapeutic response in oncology. The dataset aims to serve as a high-quality resource for researchers and developers working on projects such as automated tumor segmentation, radiomics analysis, deep learning model training for prognosis prediction, and personalized treatment strategies within the domain of head and neck oncology. The detailed 3D structure captured by the CT scans allows for a more complete and spatial understanding of the disease, moving beyond traditional 2D assessments. |
| Publications: | N/A |
| Associated Codes (URL only): | N/A |
| Funding agency: | N/A |
| Grant Number: | N/A |
| Ethics Statement: | N/A |
| Any Other Information : | N/A |
| Additional File: | N/A |
| Acknowledgments: | The authors acknowledge the Department of Oncoradiology, AIIMS New Delhi, for technical and clinical support. |
| Sr.No | First name | Last name | Organization | Designation | |
|---|---|---|---|---|---|
| 1 | Amit | Gupta | amit.aiims2014@gmail.com | NCI Jhajjar, All India Institute of Medical Sciences (AIIMS), New Delhi, India | Co-Principal Investigator |
| 2 | Krithika | Rangarajan | krithikarangarajan@aiims.edu | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Principal Investigator |
| 3 | Hema | Malhotra | hemamalhotraaiims.2020@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Program Manager |
| 4 | Ashish | Rastogi | ashishrastogi.3150@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | Data Analyst |
| 5 | Rohit | Shah | rohitaiims.2024@gmail.com | All India Institute of Medical Sciences (AIIMS), New Delhi, India | D.E.O |
| Study Accession: | CTS_1000000034 |
| Title: | 3D medical imaging data in head and neck cancer patients |
| Imaging Type: | Computed Tomography (CT) |
| Imaging Sub-type: | Diagnostic Radiology |
| Summary: | The comprehensive dataset specifically includes three-dimensional (3D) medical imaging data acquired from head and neck cancer patients. The primary imaging modality utilized for this collection is Computed Tomography (CT) scanning. CT scans provide detailed cross-sectional images essential for accurate diagnosis, tumor delineation, treatment planning (such as radiation therapy), and monitoring of therapeutic response in oncology. The dataset aims to serve as a high-quality resource for researchers and developers working on projects such as automated tumor segmentation, radiomics analysis, deep learning model training for prognosis prediction, and personalized treatment strategies within the domain of head and neck oncology. The detailed 3D structure captured by the CT scans allows for a more complete and spatial understanding of the disease, moving beyond traditional 2D assessments. |
| Keywords: | Laryngeal cancer; Head and Neck cancer; CT scan |
| Additional / Any Other Information: | N/A |
| Release Date: | April 29, 2026 |
| Access Licence Type: | Open Access |
Table 1. The sample types registered under this study are as follows:
Table 2. The samples registered under this study are as follows:
| Sample Type ID | Organism | Taxon ID | Biological Entity | Laterality | Source Tissue | Source Cell/Cell-line | Cell Organelle |
|---|---|---|---|---|---|---|---|
| CTSMT_10000000064 | Homo sapiens | 9606 | Multiple body regions | Both | N/A | N/A | N/A |
Table 2. The samples registered under this study are as follows:
| Sample Type ID | Sample ID | Subject Type | Clinical Indication (Diagnosis) | ICD-11 Code (patient health condition) | Tumor Site | Image category/label | De-identified Patient ID | Procedure | Clinical Information |
|---|---|---|---|---|---|---|---|---|---|
| CTSMT_10000000064 | CTSM_10000298062 | Head and neck cancer | Known case of cancer - Followup | 2B61 | Oropharynx (base of the tongue, right wall) | N/A | Patient_427 | CECT of Face-Neck-Chest | c/o recurrent CA oropharynx, BOT. CT2N1M0, post CTRT. |
| CTSMT_10000000064 | CTSM_10000298063 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
| CTSMT_10000000064 | CTSM_10000298066 | Head and neck cancer | Known case of cancer - Followup | 2B61 | Oropharynx- base of the tongue | N/A | Patient_431 | CECT of Face-Neck-Chest | CA base of tongue (T2N0M0), post RT |
| CTSMT_10000000064 | CTSM_10000298067 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity (Tongue) with and recurrent disease | N/A | Patient_432 | CECT of Face-Neck-Chest | F/u/c/o left lateral border of tongue, post adjuvant RT. |
| CTSMT_10000000064 | CTSM_10000298070 | Head and neck cancer | Known case of cancer - Followup | N/A | Unkown primary site | N/A | Patient_435 | CECT of Face-Neck-Chest | Ewing sarcoma, post treatment completion, on observation |
| CTSMT_10000000064 | CTSM_10000298073 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity- right lower GBS | N/A | Patient_438 | CECT of Face-Neck-Chest | Ca right lower GBS - cT3N1M0 |
| CTSMT_10000000064 | CTSM_10000298075 | Head and neck cancer | Known case of cancer - Followup | 2C23 | Larynx- glottis | N/A | Patient_440 | CECT of Face-Neck-Chest | Patient is a K/C/O CA glottis - cT4aN0M0. S/P chemo. |
| CTSMT_10000000064 | CTSM_10000298081 | Head and neck cancer | Known case of cancer - Followup | 2B6B | Nasopharynx | N/A | Patient_446 | CECT of Face-Neck-Chest | Post-op case of FOM CA. |
| CTSMT_10000000064 | CTSM_10000298083 | Head and neck cancer | Known case of cancer - Followup | 2C30 | Lymphnodes (Cervical) | N/A | Patient_448 | CECT of Neck, Chest, Abdomen & Pelvis. | CHL of cervical LN chain, post chemoradiation (2021). |
| CTSMT_10000000064 | CTSM_10000298086 | Head and neck cancer | Known case of cancer - Followup | 2B66 | Oral cavity- left buccal mucosa | N/A | Patient_451 | CECT of Face & Neck and chest. | Ca left buccal mucosa. RT 26/9/24 |
| CTSMT_10000000064 | CTSM_10000298089 | Head and neck cancer | Known case of cancer - Followup | 2B61 | Oropharynx (base of the tongue) | N/A | Patient_454 | CECT of Face-Neck-Chest | Known case of carcinoma base of tongue. Post CTRT |
| CTSMT_10000000064 | CTSM_10000298090 | Head and neck cancer | Known case of cancer - Followup | 2B62 | Oral cavity- right lateral tongue | N/A | Patient_455 | CECT of Face & Neck. Suboptimal study due to streak artefacts by dentures. | Carcinoma right anterolateral border of tongue post op |
| CTSMT_10000000064 | CTSM_10000298092 | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
| CTSMT_10000000064 | CTSM_10000298094 | Head and neck cancer | Known case of cancer - Followup | N/A | Unkown primary site | N/A | Patient_459 | CECT of Face-Neck-Chest | F/u/c/o metastatic SCC, post-op for same in dec 2024 with flap in-situ. |
| CTSMT_10000000064 | CTSM_10000298096 | Head and neck cancer | Suspicious of malignancy | N/A | Unkown primary site | N/A | Patient_461 | CECT of Head, Neck, Chest, Abdomen & Pelvis. | metastatic neuroendocrine carcinoma |
| CTSMT_10000000064 | CTSM_10000298099 | Head and neck cancer | Suspicious of malignancy | 2B51, | Mandible | N/A | Patient_464 | CECT of Face-Neck-Chest | gorlin syndrome with Scalp BCC. |
| CTSMT_10000000064 | CTSM_10000298102 | Head and neck cancer | Suspicious of malignancy | 2B69 | Oropharynx (tonsil) | N/A | Patient_467 | CECT of Face-Neck-Chest | patient is a k/c/o CA tonsil (cT2N0M0); S/P surgery, CT. Now c/o cervical level II LN. |
| CTSMT_10000000064 | CTSM_10000298103 | Head and neck cancer | Known case of cancer - Followup | 2B6A | Oropharynx | N/A | Patient_468 | CECT of Face-Neck-Chest | ca oropharynx post op/ RT [last 22/6/22] |
| CTSMT_10000000064 | CTSM_10000298104 | Head and neck cancer | Suspicious of malignancy | 2B66 | Oral cavity (left buccal mucosa) | N/A | Patient_469 | CECT of Face-Neck-Chest | k/c/o Carcinoma left cheek (BCC), status - post WLE |
| CTSMT_10000000064 | CTSM_10000298105 | Head and neck cancer | Known case of cancer - Followup | 2B67 | Parotid gland | N/A | Patient_470 | CECT of Face-Neck-Chest | Case of mucoepidermoid Ca right parotid, post op, post RT. For response assessment. |
Table 3. The experiment types registered under this study are as follows:
| Experiment Type ID | Instrument Name | Instrument Type | Manufacturer | Model |
|---|---|---|---|---|
| CTET_10000000030 | CT-Scan Machine | Multisclice | Siemens Healthineers | Somatom Definition Edge |
| Experimental Design Summary (CTET_10000000030) |
|---|
| The CT scans included in this dataset were performed for patients diagnosed with head and neck cancer at our institute. The CT images include various body regions including face, neck, chest, abdomen and pelvis. These scans were performed at various stages of management of the cancer, including pre-treatment scans, post-radiotherapy response assessment scans, and post-operative follow-up scans. All the scans were double reported by two radiologists - first, a resident radiologist (3-6 years of experience), and second reading by a specialist onco-radiologist (more than 10 years of experience). |
| Acquired Images Annotation Description (CTET_10000000030) |
|---|
| Each CT scan in the dataset is accompanied by the summary of main findings in the corresponding radiology reports. All the scans were double reported by two radiologists - first, a resident radiologist (3-6 years of experience), and second reading by a specialist onco-radiologist (more than 10 years of experience). The findings from these reports provided in this dataset, are robust scan-level labels for each of the CT exams included in the dataset. Image and pixel-level annotations are not included in this dataset. |
Table 4. The experiments registered under this study are as follows:
| Sample ID | Experiment Type ID | Experiment ID | Image type (Original / Derived / Unknown) | Any Other Information | Image plane | Slice Progression Direction | Slice thickness (in mm) | Image Count | Contrast / Bolus ingredient | Image file format | Image modality type (contrast-enhanced or non-contrast) | Implants or devices visible in scan (yes/no) | Motion artifacts noted (yes/no) | Type of contrast agent | Use of contrast agent (yes/no) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CTSM_10000297751 | CTET_10000000030 | CTE_10000270278 | Derived | N/A | Axial | superio-inferior | 1 | 369 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297752 | CTET_10000000030 | CTE_10000270279 | Derived | N/A | Axial | superio-inferior | 1 | 845 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297753 | CTET_10000000030 | CTE_10000270280 | Derived | N/A | Axial | superio-inferior | 1 | 1057 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298330 | CTET_10000000030 | CTE_10000270857 | Derived | N/A | Axial | superio-inferior | 1 | 1094 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298331 | CTET_10000000030 | CTE_10000270858 | Derived | N/A | Axial | superio-inferior | 1 | 960 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298332 | CTET_10000000030 | CTE_10000270859 | Derived | N/A | Axial | superio-inferior | 1 | 877 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298333 | CTET_10000000030 | CTE_10000270860 | Derived | N/A | Axial | superio-inferior | 1 | 952 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298334 | CTET_10000000030 | CTE_10000270861 | Derived | N/A | Axial | superio-inferior | 1 | 386 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298335 | CTET_10000000030 | CTE_10000270862 | Derived | N/A | Axial | superio-inferior | 1 | 783 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298336 | CTET_10000000030 | CTE_10000270863 | Derived | N/A | Axial | superio-inferior | 1 | 1006 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298337 | CTET_10000000030 | CTE_10000270864 | Derived | N/A | Axial | superio-inferior | 1 | 1008 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298338 | CTET_10000000030 | CTE_10000270865 | Derived | N/A | Axial | superio-inferior | 1 | 435 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298339 | CTET_10000000030 | CTE_10000270866 | Derived | N/A | Axial | superio-inferior | 1 | 818 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298340 | CTET_10000000030 | CTE_10000270867 | Derived | N/A | Axial | superio-inferior | 1 | 906 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298342 | CTET_10000000030 | CTE_10000270869 | Derived | N/A | Axial | superio-inferior | 1 | 769 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298343 | CTET_10000000030 | CTE_10000270870 | Derived | N/A | Axial | superio-inferior | 1 | 828 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298344 | CTET_10000000030 | CTE_10000270871 | Derived | N/A | Axial | superio-inferior | 1 | 891 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000298345 | CTET_10000000030 | CTE_10000270872 | Derived | N/A | Axial | superio-inferior | 1 | 866 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297755 | CTET_10000000030 | CTE_10000270282 | Derived | N/A | Axial | superio-inferior | 1 | 898 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| CTSM_10000297757 | CTET_10000000030 | CTE_10000270284 | Derived | N/A | Axial | superio-inferior | 1 | 775 | non ionic iodinated contrast | dcm | CECT | N/A | no | non ionic iodinated contrast | yes |
| Experiment ID | Image File Name (with path) | Image Preview | Image Size |
|---|---|---|---|
| CTE_10000270393 | HNC_data/Patient_231.zip |  Download Image |
454M |
| CTE_10000270394 | HNC_data/Patient_232.zip | Download Image |
195M |
| CTE_10000270395 | HNC_data/Patient_233.zip | Download Image |
325M |
| CTE_10000270396 | HNC_data/Patient_234.zip | Download Image |
460M |
| CTE_10000270397 | HNC_data/Patient_235.zip | Download Image |
179M |
| CTE_10000270398 | HNC_data/Patient_236.zip | Download Image |
205M |
| CTE_10000270399 | HNC_data/Patient_237.zip | Download Image |
170M |
| CTE_10000270400 | HNC_data/Patient_238.zip | Download Image |
221M |
| CTE_10000270401 | HNC_data/Patient_239.zip | Download Image |
232M |
| CTE_10000270402 | HNC_data/Patient_240.zip | Download Image |
163M |