9YVP image
Deposition Date 2025-10-23
Release Date 2026-07-01
Last Version Date 2026-07-01
Entry Detail
PDB ID:
9YVP
Title:
Cryo-EM structure of the L900V;R993P;S1060R mutant mouse TRPM4 channel in an open state bound to NC1 and PI(4,5)P2.
Biological Source:
Source Organism(s):
Mus musculus (Taxon ID: 10090)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.81 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential
Gene (Uniprot):Trpm4
Mutagens:L900V, R993P, S1060R
Chain IDs:A (auth: B), B (auth: A), C, D
Chain Length:1229
Number of Molecules:4
Biological Source:Mus musculus
Primary Citation
Structural mechanism of Necrocide 1 activation of human TRPM4 that triggers necrosis by sodium overload.
Biorxiv ? ? ? (2026)
PMID: 41659621 DOI: 10.64898/2026.01.28.702369

Abstact

The small molecule Necrocide 1 (NC1) constitutively activates human TRPM4, triggering Na(+) influx and leading to necrotic cell death, a process termed Necrosis by Sodium Overload (NECSO). NC1 activation is specific to human TRPM4 and does not affect most of the other mammalian TRPM4 orthologs. Here, we elucidate the molecular mechanism underlying NC1 activation and its species-specific selectivity for human TRPM4 using a combination of single-particle cryo-EM, electrophysiology, and cell death assays. We identify the NC1-binding site and the key molecular determinants responsible for channel activation. In addition, we explain the insensitivity of mouse TRPM4 to NC1 and pinpoint specific residues that define NC1 specificity for human TRPM4. Given the upregulation of TRPM4 in various human cancers, our mechanistic insights into NC1 activation and specificity provide a framework for the potential development of cancer therapeutics targeting TRPM4-mediated necrosis.

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Primary Citation of related structures
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