ISDA: 9YD5

Deposition Date 2025-09-21

Release Date 2026-09-23

Last Version Date 2026-09-23

Entry Detail

PDB ID:

9YD5

Keywords:

TRANSCRIPTION

Title:

RNA polymerase II on Super pause sequence in the pre-translocated state

Biological Source:

Source Organism(s):

Sus scrofa (Taxon ID: 9823)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Sus scrofa

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.80 Å

Aggregation State:

2D ARRAY

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):POLR2A
Chain IDs:A
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:A0A8D1DPV6 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):POLR2B
Chain IDs:B
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:I3LGP4 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):POLR2C
Chain IDs:C
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:I3LCH3 Pfam ID:PF01193, PF01000

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Chain IDs:D
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:A0A8D1GCS3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):POLR2E
Chain IDs:E
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:I3LSI7 Pfam ID:PF03871, PF01191

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):POLR2F
Chain IDs:F
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:A0A8D1KNW4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):POLR2G
Chain IDs:G
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:A0A4X1VKG7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):POLR2H
Chain IDs:H
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:I3LCB2 Pfam ID:PF03870

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):POLR2I
Chain IDs:I
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:P60899 Pfam ID:PF02150, PF01096

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):POLR2L
Chain IDs:J
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:Q32P78 Pfam ID:PF01194

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase I
Gene (Uniprot):POLR2J
Chain IDs:K
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:F1RKE4 Pfam ID:PF13656

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases
Gene (Uniprot):POLR2K
Chain IDs:L
Chain Length:0
Number of Molecules:1
Biological Source:Sus scrofa

UniProt ID:A0A8D0JYF1

Polymer Type:polydeoxyribonucleotide
Molecule:DNA non-template strand
Chain IDs:M (auth: N)
Chain Length:0
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polyribonucleotide
Molecule:RNA transcript
Chain IDs:N (auth: P)
Chain Length:0
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA template strand
Chain IDs:O (auth: T)
Chain Length:0
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

RNA polymerase II on Super pause sequence in the pre-translocated state

Vazquez Nunez, R, Vos, S.M.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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