Add one or more PDB IDs of the same protein to compare.
1Load structuresfrom ISDA (BinaryCIF)
2Superimposeoptional · visual overlay
Aligns every loaded structure onto the reference (Cα-based, Needleman-Wunsch correspondence + Kabsch fit). Purely visual — the distance numbers are computed independently and are unaffected by this.
3Measure distancesapplied to every loaded structure
Point / Group A
Atom–Atom mode: enter chain, residue #, and exact atom name.
Point / Group B
Atom–Atom mode: enter chain, residue #, and exact atom name.
Group A/B are defined once and applied to every loaded structure — this assumes consistent chain IDs and residue numbering across entries (typical for multiple depositions of the same protein). Structures where the selection can't be resolved are marked N/A rather than skipped silently.
4Resultsclick a row to view that structure in 3D
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History

3D Structure — click a result row to load & focus that structure