9NZD image
Deposition Date 2025-03-31
Release Date 2026-04-15
Last Version Date 2026-04-15
Entry Detail
PDB ID:
9NZD
Keywords:
LYASE/DNA
Title:
Crystal structure of AfNth1-K122A mutant bound to Tg-DNA duplex complex in an intermediate state
Biological Source:
Source Organism(s):
Archaeoglobus fulgidus (Taxon ID: 2234)
synthetic construct (Taxon ID: 32630)
Expression System(s):
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.10 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 41 21 2
9NZD validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endonuclease III
Gene (Uniprot):nth
Mutagens:K122A
Chain IDs:A, D
Chain Length:209
Number of Molecules:2
Biological Source:Archaeoglobus fulgidus
UniProt ID:O28581
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*TP*GP*GP*CP*GP*
Chain IDs:B, E
Chain Length:13
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*CP*GP*CP*GP*AP*
Chain IDs:C, F
Chain Length:13
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
SF4
Primary Citation
Crystal structure of AfNth1-K122A mutant bound to Tg-DNA duplex complex in an intermediate state
To be published ? ? ? (?)
Primary Citation of related structures
9NZC
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