ISDA: 9NZC

Deposition Date 2025-03-31

Release Date 2026-04-15

Last Version Date 2026-04-15

Entry Detail

PDB ID:

9NZC

Keywords:

LYASE/DNA

Title:

Crystal structure of AfNth1:Tg-DNA duplex complex in a pre-intermediate state

Biological Source:

Source Organism(s):

Archaeoglobus fulgidus (Taxon ID: 2234)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.50 Å

R-Value Free:

0.28

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 41 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Endonuclease III
Gene (Uniprot):nth
Chain IDs:A, D
Chain Length:209
Number of Molecules:2
Biological Source:Archaeoglobus fulgidus

UniProt ID:O28581

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*TP*GP*GP*CP*GP*
Chain IDs:B, E
Chain Length:13
Number of Molecules:2
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*CP*GP*CP*GP*AP*
Chain IDs:C, F
Chain Length:13
Number of Molecules:2
Biological Source:synthetic construct

Ligand Molecules

SF4

Primary Citation

Crystal structure of AfNth1:Tg-DNA duplex complex in a pre-intermediate state

Syed, A, Arvai, A.S, Tsai, C.L, Tainer, J.A.Show

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Primary Citation of related structures

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