ISDA: 25YJ

Deposition Date 2026-04-22

Release Date 2026-10-28

Last Version Date 2026-10-28

Entry Detail

PDB ID:

25YJ

Keywords:

MOTOR PROTEIN

Title:

Cryo-EM structure of the V1 domain of V-ATPase from rat brain, state 1

Biological Source:

Source Organism(s):

Rattus norvegicus (Taxon ID: 10116)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.25 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase catalyti
Gene (Uniprot):Atp6v1a
Chain IDs:A, B, C
Chain Length:647
Number of Molecules:3
Biological Source:Rattus norvegicus

UniProt ID:D4A133 EC:7.1.2.2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):Atp6v1b2
Chain IDs:N (auth: D), O (auth: E), P (auth: F)
Chain Length:511
Number of Molecules:3
Biological Source:Rattus norvegicus

UniProt ID:P62815

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):Atp6v1d
Chain IDs:D (auth: H)
Chain Length:247
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:F7EUL0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):Atp6v1e1
Chain IDs:E (auth: I), F (auth: J), G (auth: K)
Chain Length:226
Number of Molecules:3
Biological Source:Rattus norvegicus

UniProt ID:Q6PCU2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):Atp6v1f
Chain IDs:H (auth: L)
Chain Length:119
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P50408

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit
Gene (Uniprot):Atp6v1g2
Chain IDs:I (auth: M), J (auth: N), K (auth: O)
Chain Length:118
Number of Molecules:3
Biological Source:Rattus norvegicus

UniProt ID:Q8R2H0

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Effector protein SidK
Chain IDs:L (auth: Q), M (auth: R)
Chain Length:573
Number of Molecules:2
Biological Source:Rattus norvegicus

Ligand Molecules

ADP

Primary Citation

Cryo-EM structure of the V1 domain of V-ATPase from rat brain, state 1

Nishida, Y, Ueda, F, Yokoyama, K.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

Feedback Form