Structural Superimposition

Target ID & Chain

Source ID & Chain

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Structural Entry Filters:

Organisms
- Homo sapiens (20,749)
- Severe acute respiratory syndrome coronavirus 2 (3,705)
- Escherichia coli (2,646)
- Synthetic construct (2,501)
- Mus musculus (1,776)
- Saccharomyces cerevisiae (1,275)
- Human immunodeficiency virus 1 (1,022)
- Mycobacterium tuberculosis (839)
- Arabidopsis thaliana (686)
- Rattus norvegicus (684)
- Oryctolagus cuniculus (468)
- Bos taurus (430)
- Escherichia coli k-12 (412)
- Thermus thermophilus (399)
- Pseudomonas aeruginosa (390)
- Saccharomyces cerevisiae (strain atcc 204508 / s288c) (342)
- Saccharomyces cerevisiae s288c (314)
- Staphylococcus aureus (311)
- Coxsackievirus a16 (308)
- Escherichia coli (strain k12) (307)
- Zika virus (304)
- Chikungunya virus (284)
- Gallus gallus (275)
- Bacillus subtilis (271)
- Drosophila melanogaster (260)
Methods
- X-RAY DIFFRACTION (49,035)
- ELECTRON MICROSCOPY (6,716)
- SOLUTION NMR (1,476)
- NEUTRON DIFFRACTION (28)
- SOLUTION SCATTERING (15)
- SOLID-STATE NMR (14)
- ELECTRON CRYSTALLOGRAPHY (12)
- THEORETICAL MODEL (2)
Years
- 2026 (3,078)
- 2025 (3,857)
- 2024 (3,504)
- 2023 (3,481)
- 2022 (3,184)
- 2021 (2,853)
- 2020 (3,470)
- 2019 (2,327)
- 2018 (2,575)
- 2017 (2,420)
- 2016 (2,459)
- 2015 (2,092)
- 2014 (2,194)
- 2013 (2,185)
- 2012 (2,279)
- 2011 (1,682)
- 2010 (1,724)
- 2009 (1,572)
- 2008 (1,588)
- 2007 (1,530)
- 2006 (1,206)
- 2005 (1,115)
- 2004 (1,017)
- 2003 (768)
- 2002 (542)
Symmetry
- P 21 21 21 (11,164)
- P 1 (8,016)
- P 1 21 1 (7,889)
- C 1 2 1 (5,559)
- C 2 2 21 (2,587)
- P 21 21 2 (2,466)
- P 43 21 2 (1,784)
- P 41 21 2 (1,452)
- P 32 2 1 (1,449)
- P 31 2 1 (1,359)
- I 2 2 2 (1,018)
- P 43 (904)
- P 61 2 2 (842)
- P 61 (663)
- P 65 2 2 (660)
- H 3 2 (596)
- P 65 (555)
- P 31 (456)
- H 3 (422)
- I 2 3 (358)
- P 2 21 21 (328)
- P 63 (325)
- I 1 2 1 (309)
- P 43 2 2 (242)
- I 4 (230)
Ligands
- EDO (4,569)
- DMS (2,728)
- PO4 (2,437)
- PEG (1,473)
- ACT (1,467)
- SAH (1,340)
- ADP (1,312)
- ATP (1,006)
- PLP (955)
- NAG (693)
- ANP (681)
- SAM (670)
- UDP (588)
- COA (573)
- GDP (518)
- MPD (512)
- SF4 (504)
- MES (493)
- GTP (487)
- PG4 (483)
- TRS (474)
- PGE (442)
- CIT (416)
- FMT (405)
- EPE (395)
Resolution
- <1 (196)
- 1.0 - 1.5 (4,428)
- 1.5 - 2.0 (16,087)
- 2.0 - 2.5 (16,009)
- 2.5 - 3.0 (9,116)
- 3.0 - 3.5 (3,057)
- 3.5 - 4.0 (838)
- 4.0 - 4.5 (198)
- 4.5 - 5.0 (65)
- >5 (171)
Modified Residue
- MSE (1,881)
- SEP (1,227)
- TPO (1,220)
- PTR (665)
- LLP (468)
- PSU (371)
- CSO (331)
- 5MC (295)
- MA6 (278)
- 5MU (269)
- OMG (259)
- CME (254)
- UR3 (252)
- CSS (237)
- 2MG (227)
- CSD (216)
- ASN (207)
- OMU (206)
- 4OC (202)
- OMC (190)
- ALY (189)
- DOC (177)
- G7M (169)
- 4SU (132)
- 2MA (129)

Search Count: 57,254

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All Selected

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9ZB8

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Crystal Structure Of Human Ggpps Bound To Selective Inhibitor Cml-07-119

Organism: Homo sapiens
Method: X-RAY DIFFRACTION
Resolution:2.64 Å Release Date: 2026-09-09
Classification: TRANSFERASE/INHIBITOR
Ligands: A1C1E, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9ZB8

Organism: Homo sapiens
Method: X-RAY DIFFRACTION
Release Date: 2026-09-09
Ligands: A1C1E, MG

Structural Superimposition 3D-Fold Search Interaction Explorer

6ZMW

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Structure Of A Human 48S Translational Initiation Complex

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2020-09-23
Classification: TRANSLATION
Ligands: ZN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

6ZMW

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2020-09-23
Ligands: ZN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer

8OZ0

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Structure Of A Human 48S Translation Initiation Complex With Eif4F And Eif4A

Method: ELECTRON MICROSCOPY
Release Date: 2024-02-07
Classification: TRANSLATION
Ligands: ZN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8OZ0

Method: ELECTRON MICROSCOPY
Release Date: 2024-02-07
Ligands: ZN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer

8PPL

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Mers-Cov Nsp1 Bound To The Human 43S Pre-Initiation Complex

Organism: Middle east respiratory syndrome-related coronavirus, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-10-18
Classification: TRANSLATION
Ligands: ZN, GTP, MG, MET, UNX

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PPL

Organism: Middle east respiratory syndrome-related coronavirus, Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2023-10-18
Ligands: ZN, GTP, MG, MET, UNX

Structural Superimposition 3D-Fold Search Interaction Explorer

8PJ1

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Structure Of Human 48S Translation Initiation Complex In Open Codon Scanning State (48S-1)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Classification: RIBOSOME
Ligands: MG, ZN, GTP, MET

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PJ1

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Ligands: MG, ZN, GTP, MET

Structural Superimposition 3D-Fold Search Interaction Explorer

8PJ3

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Structure Of Human 48S Translation Initiation Complex Upon Transfer Of Initiator Trna To Eif5B (48S-3)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Classification: RIBOSOME
Ligands: GTP, NA, MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PJ3

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Ligands: GTP, NA, MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

8PJ4

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Structure Of Human 48S Translation Initiation Complex After Eif5 Release (48S-4)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Classification: RIBOSOME
Ligands: GTP, NA, MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PJ4

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Ligands: GTP, NA, MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

7A09

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Structure Of A Human Abce1-Bound 43S Pre-Initiation Complex - State Iii

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2020-10-14
Classification: RIBOSOME
Ligands: ZN, SF4, ADP, MG, ATP, MET, GTP

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

7A09

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2020-10-14
Ligands: ZN, SF4, ADP, MG, ATP, MET, GTP

Structural Superimposition 3D-Fold Search Interaction Explorer

6ZP4

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Sars-Cov-2 Nsp1 Bound To A Human 43S Preinitiation Ribosome Complex - State 2

Organism: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Method: ELECTRON MICROSCOPY
Release Date: 2020-07-29
Classification: VIRAL PROTEIN
Ligands: ZN, GTP, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

6ZP4

Organism: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Method: ELECTRON MICROSCOPY
Release Date: 2020-07-29
Ligands: ZN, GTP, MG

Structural Superimposition 3D-Fold Search Interaction Explorer

7QP6

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Structure Of The Human 48S Initiation Complex In Open State (H48S Aug Open)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2022-05-11
Classification: RIBOSOME
Ligands: ZN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

7QP6

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2022-05-11
Ligands: ZN, MG

Structural Superimposition 3D-Fold Search Interaction Explorer

9ZB9

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Cryo-Em Structure Of Human Ggpps Bound To Selective Inhibitor Cml-07-119

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-09
Classification: TRANSFERASE/INHIBITOR
Ligands: A1C1E, MG

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9ZB9

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-09
Ligands: A1C1E, MG

Structural Superimposition 3D-Fold Search Interaction Explorer

9ZBD

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Human Ggpps In The Closed Hexamer Conformation

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-09
Classification: TRANSFERASE/INHIBITOR

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9ZBD

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-09

Structural Superimposition 3D-Fold Search Interaction Explorer

9ZBC

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Human Ggpps In The Open Hexamer Conformation

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-09
Classification: TRANSFERASE/INHIBITOR

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9ZBC

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-09-09

Structural Superimposition 3D-Fold Search Interaction Explorer

8PJ2

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Structure Of Human 48S Translation Initiation Complex In Aug Recognition State After Eif5-Induced Gtp Hydrolysis By Eif2 (48S-2)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Classification: RIBOSOME
Ligands: MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PJ2

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Ligands: MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

9XON

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Ripk1 Death Domain Filamentation Drives Tnf-Induced Apoptosis

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Resolution:2.50 Å Release Date: 2026-10-14
Classification: APOPTOSIS

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9XON

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2026-10-14

Structural Superimposition 3D-Fold Search Interaction Explorer

8PJ5

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Structure Of Human 48S Translation Initiation Complex After Eif2 Release Prior 60S Subunit Joining (48S-5)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Classification: RIBOSOME
Ligands: MG, GTP, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PJ5

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Ligands: MG, GTP, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

7QP7

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Structure Of The Human 48S Initiation Complex In Closed State (H48S Aug Closed)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2022-05-11
Classification: RIBOSOME
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

7QP7

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2022-05-11
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

8PJ6

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Structure Of Human 48S Translation Initiation Complex With Initiator Trna, Eif1A And Eif3 (Off-Pathway)

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Classification: RIBOSOME
Ligands: MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

8PJ6

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-08-14
Ligands: MG, ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

9BLN

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The Structure Of Human Pdcd4 Bound To The 40S-Eif4A-Eif3-Eif1 Complex

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-09-04
Classification: ANTITUMOR PROTEIN
Ligands: MG, K, SPD, ZN, ACY

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

9BLN

Organism: Homo sapiens
Method: ELECTRON MICROSCOPY
Release Date: 2024-09-04
Ligands: MG, K, SPD, ZN, ACY

Structural Superimposition 3D-Fold Search Interaction Explorer

6ZON

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Sars-Cov-2 Nsp1 Bound To A Human 43S Preinitiation Ribosome Complex - State 1

Organism: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Method: ELECTRON MICROSCOPY
Release Date: 2020-07-29
Classification: VIRAL PROTEIN
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer Distance Explorer

6ZON

Organism: Homo sapiens, Severe acute respiratory syndrome coronavirus 2
Method: ELECTRON MICROSCOPY
Release Date: 2020-07-29
Ligands: ZN

Structural Superimposition 3D-Fold Search Interaction Explorer

Protein Functional Filters:

Enzyme
- Transferases (49,699)
- Hydrolases (12,722)
- Lyases (5,387)
- Oxidoreductases (800)
- Ligases (733)
- Isomerases (475)
- Translocases (12)
Uniprots
- P0DTD1 (3,313)
- P24941 (516)
- P0DTC1 (435)
- P06746 (433)
- P00533 (389)
- P03366 (383)
- P68400 (322)
- P20435 (303)
- P0A7Z4 (288)
- P20434 (287)
- P20436 (287)
- Q65900 (287)
- P22139 (286)
- P40422 (286)
- P0A800 (270)
- Q16539 (267)
- Q32ZE1 (264)
- P0A8T7 (251)
- Q9Y253 (241)
- P04050 (236)
- P80380 (236)
- P02358 (234)
- P17291 (234)
- P80373 (233)
- P60422 (232)
PFAM
- PF00069 (5,547)
- PF07714 (2,689)
- PF05409 (2,105)
- PF00467 (1,269)
- PF00562 (1,236)
- PF01193 (1,232)
- PF01000 (1,232)
- PF04565 (1,230)
- PF04560 (1,230)
- PF04563 (1,219)
- PF04561 (1,214)
- PF01192 (1,207)
- PF04998 (1,203)
- PF00623 (1,198)
- PF05000 (1,198)
- PF04997 (1,196)
- PF04983 (1,195)
- PF01661 (1,067)
- PF00312 (1,042)
- PF00177 (1,040)
- PF00164 (1,037)
- PF00380 (1,027)
- PF00411 (1,020)
- PF00400 (1,004)
- PF01479 (1,001)

Structural Entry Filters:

Search Count: 57,254

Protein Functional Filters:

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