ISDA: 9ZOF

Deposition Date 2025-12-15

Release Date 2026-08-05

Last Version Date 2026-08-05

Entry Detail

PDB ID:

9ZOF

Keywords:

TRANSCRIPTION

Title:

Cryo-EM structure of the complete Sulfolobus acidocaldarius RNA polymerase in closed clamp conformation

Biological Source:

Source Organism(s):

Sulfolobus acidocaldarius DSM 639 (Taxon ID: 330779)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.37 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo1N
Chain IDs:A
Chain Length:880
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P11512 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo2
Chain IDs:B
Chain Length:1126
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P11513 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo1C
Chain IDs:C
Chain Length:393
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P11514 Pfam ID:PF04998 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo3
Chain IDs:K (auth: D)
Chain Length:264
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P39471 Pfam ID:PF01193, PF01000 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo7
Chain IDs:J (auth: E)
Chain Length:183
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P39466 Pfam ID:PF03876, PF00575 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo4
Chain IDs:M (auth: F)
Chain Length:114
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:Q4JB12 Pfam ID:PF03874 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo8
Chain IDs:D (auth: G)
Chain Length:124
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:Q4JAY4 Pfam ID:PF16992 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo5
Chain IDs:E (auth: H)
Chain Length:84
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P11521 Pfam ID:PF01191 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo6
Chain IDs:F (auth: K)
Chain Length:89
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P39463 Pfam ID:PF01192 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo11
Chain IDs:G (auth: L)
Chain Length:90
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P46217 Pfam ID:PF13656 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo10
Chain IDs:H (auth: N)
Chain Length:66
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:P39472 Pfam ID:PF01194 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo12
Chain IDs:L (auth: P)
Chain Length:48
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:Q4JAE8 Pfam ID:PF03604 EC:2.7.7.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase s
Gene (Uniprot):rpo13
Chain IDs:I (auth: Y)
Chain Length:105
Number of Molecules:1
Biological Source:Sulfolobus acidocaldarius DSM 639

UniProt ID:Q4JAJ6 Pfam ID:PF12136 EC:2.7.7.6

Ligand Molecules