ISDA: 9YMN

Deposition Date 2025-10-10

Release Date 2026-07-22

Last Version Date 2026-07-22

Entry Detail

PDB ID:

9YMN

Keywords:

SIGNALING PROTEIN, ONCOPROTEIN/INHIBITOR

Title:

Crystal Structure of human KRAS G12D in complex with GDP and compound 7

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)

Expression System(s):

Escherichia coli bl21(de3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.25 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Isoform 2B of GTPase KRas
Gene (Uniprot):KRAS
Mutagens:G12D, C118A
Chain IDs:A
Chain Length:184
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P01116 Pfam ID:PF00071 EC:3.6.5.2

Ligand Molecules

A1CZE

GDP

Primary Citation

Expanding Addressable KRAS Mutations through the Structure- and Property-Based Design of Dual-State (GDP/GTP), Reversible Pan-KRAS Inhibitors.

Wurz, R.P, Allen, J.R, Allen, J.G, Amegadzie, A, Chen, N, Eshon, J, Li, K, Li, X, Li, Y, Manoni, F, Medina, J.M, Navaratne, P, Pettus, L.H, Rahimoff, R, Stellwagen, J, Tercenio, Q, Weires, N, Wigman, B, Yamano, M, Zhao, W, Husemoen, G, Leth-Petersen, S, Bauer, D, Frohn, M.J, Mukhina, O.A, Boursier, M, Vaish, A, Poppe, L, Mohr, C, Chen, Y.C, Diaz, G.J, Gaida, K, Hughes, P.E, Khetan, J, Mohn, D, Osgood, T, Saiki, A.Y, Rex, K, Verma, R, Wang, P, Rui, H, Yu, J, Dahal, U.P, Li, Y, Agarwal, P, Wegesser, T, Lanman, B.A.Show

J.Med.Chem. ? ? ? (2026)

PMID: 42446418 DOI: 10.1021/acs.jmedchem.6c01325

Primary Citation of related structures

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