9W4N image
Deposition Date 2025-07-31
Release Date 2025-11-26
Last Version Date 2026-05-13
Entry Detail
PDB ID:
9W4N
Title:
Structure of rat TRPV1 in complex with SB-366791
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.25 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transient receptor potential
Gene (Uniprot):Trpv1
Chain IDs:A, B, C, D
Chain Length:878
Number of Molecules:4
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Structures of TRPV1 bound by hyperthermia-inducing analgesics.
Cell Rep 45 116765 116765 (2026)
PMID: 41447532 DOI: 10.1016/j.celrep.2025.116765

Abstact

TRPV1, a member of the transient receptor potential vanilloid subfamily, mediates nociception and thermoregulation. TRPV1-targeting analgesics frequently induce hyperthermia, underscoring the need for structural insights to guide the development of safer compounds. Here, we determined the structures of rat TRPV1 bound to the clinical candidate analgesics AMG517, AMG9810, and SB366791. AMG517 and AMG9810 are deeply situated within the S3-S4 interface of the vanilloid pocket, where they interact with residues from the S3-S6 helices, as well as the S4-S5 linker. These interactions induce local deformations in the TRP-box and lower S6 helix, accompanied by a modest rotation of the S1-S4 bundle, leading to partial dilation of the lower gate. The distinct allosteric changes of AMG517 and AMG9810, compared with the non-hyperthermic ligand SB366791, suggest a structural basis by which TRPV1-targeting analgesics influence thermoregulation and provide insights for designing safer analogs.

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Primary Citation of related structures
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