9T5C image
Deposition Date 2025-11-05
Release Date 2026-06-17
Last Version Date 2026-07-15
Entry Detail
PDB ID:
9T5C
Keywords:
Title:
Naked mole-rat 80S ribosome in post-translocation non-rotated state
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.89 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:mRNA
Chain IDs:A (auth: B)
Chain Length:10
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polyribonucleotide
Molecule:28S ribosomal RNA
Chain IDs:B (auth: L5)
Chain Length:4731
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:C (auth: L7)
Chain Length:120
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polyribonucleotide
Molecule:5.8S ribosomal RNA
Chain IDs:D (auth: L8)
Chain Length:158
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL8
Chain IDs:E (auth: LA)
Chain Length:257
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):Rpl3
Chain IDs:BC (auth: LB)
Chain Length:403
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:F (auth: LC)
Chain Length:419
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):Rpl5
Chain IDs:G (auth: LD)
Chain Length:297
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:H (auth: LE)
Chain Length:296
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:I (auth: LF)
Chain Length:270
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):Rpl7a
Chain IDs:J (auth: LG)
Chain Length:266
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):Rpl9
Chain IDs:K (auth: LH)
Chain Length:192
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10
Gene (Uniprot):Rpl10
Chain IDs:L (auth: LI)
Chain Length:214
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL11
Chain IDs:M (auth: LJ)
Chain Length:178
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):Rpl13
Chain IDs:N (auth: LL)
Chain Length:211
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:O (auth: LM)
Chain Length:217
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L15
Gene (Uniprot):Rpl15
Chain IDs:P (auth: LN)
Chain Length:204
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13a is
Gene (Uniprot):Rpl13a
Chain IDs:Q (auth: LO)
Chain Length:203
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL17
Chain IDs:R (auth: LP)
Chain Length:184
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18
Gene (Uniprot):Rpl18
Chain IDs:S (auth: LQ)
Chain Length:188
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):Rpl19
Chain IDs:T (auth: LR)
Chain Length:196
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL18A
Chain IDs:U (auth: LS)
Chain Length:176
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL21
Chain IDs:V (auth: LT)
Chain Length:160
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL22
Chain IDs:W (auth: LU)
Chain Length:128
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23
Gene (Uniprot):Rpl23
Chain IDs:X (auth: LV)
Chain Length:140
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L24
Gene (Uniprot):Rpl24
Chain IDs:Y (auth: LW)
Chain Length:157
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):Rpl23a
Chain IDs:Z (auth: LX)
Chain Length:156
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L26
Gene (Uniprot):Rpl26
Chain IDs:AA (auth: LY)
Chain Length:145
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):RPL27
Chain IDs:BA (auth: LZ)
Chain Length:136
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Gene (Uniprot):Rpl27a
Chain IDs:CA (auth: La)
Chain Length:148
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Chain IDs:DA (auth: Lb)
Chain Length:160
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):LOC101721779
Chain IDs:EA (auth: Lc)
Chain Length:115
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL31
Chain IDs:FA (auth: Ld)
Chain Length:125
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):Rpl32
Chain IDs:GA (auth: Le)
Chain Length:135
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL35A
Chain IDs:HA (auth: Lf)
Chain Length:110
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Gene (Uniprot):Rpl34
Chain IDs:IA (auth: Lg)
Chain Length:117
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):Rpl35
Chain IDs:JA (auth: Lh)
Chain Length:123
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):Rpl36
Chain IDs:KA (auth: Li)
Chain Length:105
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:LA (auth: Lj)
Chain Length:97
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL38
Chain IDs:MA (auth: Lk)
Chain Length:70
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):LOC101707773
Chain IDs:NA (auth: Ll)
Chain Length:51
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-ribosomal protein e
Gene (Uniprot):Uba52
Chain IDs:OA (auth: Lm)
Chain Length:128
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Gene (Uniprot):RPL41
Chain IDs:PA (auth: Ln)
Chain Length:25
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36a
Gene (Uniprot):Rpl36al
Chain IDs:QA (auth: Lo)
Chain Length:106
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37a
Gene (Uniprot):Rpl37a
Chain IDs:RA (auth: Lp)
Chain Length:92
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):RPL28
Chain IDs:SA (auth: Lr)
Chain Length:137
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polyribonucleotide
Molecule:18S ribosomal RNA
Chain IDs:TA (auth: S2)
Chain Length:1870
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polyribonucleotide
Molecule:tRNA
Chain IDs:UA (auth: S6)
Chain Length:75
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polyribonucleotide
Molecule:tRNA
Chain IDs:VA (auth: S7)
Chain Length:75
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPSA
Chain IDs:WA (auth: SA)
Chain Length:295
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS3A
Chain IDs:XA (auth: SB)
Chain Length:264
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):Rps2
Chain IDs:YA (auth: SC)
Chain Length:293
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS3
Chain IDs:ZA (auth: SD)
Chain Length:243
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):Rps4x
Chain IDs:AB (auth: SE)
Chain Length:263
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):Rps5
Chain IDs:BB (auth: SF)
Chain Length:204
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:CB (auth: SG)
Chain Length:249
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):Rps7
Chain IDs:DB (auth: SH)
Chain Length:194
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):Rps8
Chain IDs:EB (auth: SI)
Chain Length:208
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Gene (Uniprot):Rps9
Chain IDs:FB (auth: SJ)
Chain Length:194
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS10
Chain IDs:GB (auth: SK)
Chain Length:165
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):RPS11
Chain IDs:HB (auth: SL)
Chain Length:158
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):Rps13
Chain IDs:IB (auth: SN)
Chain Length:151
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):Rps14
Chain IDs:JB (auth: SO)
Chain Length:151
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15
Gene (Uniprot):Rps15
Chain IDs:KB (auth: SP)
Chain Length:145
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S16
Gene (Uniprot):Rps16
Chain IDs:LB (auth: SQ)
Chain Length:146
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17
Gene (Uniprot):Rps17
Chain IDs:MB (auth: SR)
Chain Length:135
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Gene (Uniprot):Rps18
Chain IDs:NB (auth: SS)
Chain Length:152
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19
Gene (Uniprot):Rps19
Chain IDs:OB (auth: ST)
Chain Length:145
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S20
Gene (Uniprot):Rps20
Chain IDs:PB (auth: SU)
Chain Length:119
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Gene (Uniprot):Rps21
Chain IDs:QB (auth: SV)
Chain Length:83
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15a is
Gene (Uniprot):Rps15a
Chain IDs:RB (auth: SW)
Chain Length:130
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23
Gene (Uniprot):Rps23
Chain IDs:SB (auth: SX)
Chain Length:143
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):Rps24
Chain IDs:TB (auth: SY)
Chain Length:133
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):Rps25
Chain IDs:UB (auth: SZ)
Chain Length:125
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):Rps26
Chain IDs:VB (auth: Sa)
Chain Length:115
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):Rps27
Chain IDs:WB (auth: Sb)
Chain Length:84
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):Rps28
Chain IDs:XB (auth: Sc)
Chain Length:69
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Gene (Uniprot):Rps29
Chain IDs:YB (auth: Sd)
Chain Length:56
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-like protein fubi a
Gene (Uniprot):Fau
Chain IDs:ZB (auth: Se)
Chain Length:133
Number of Molecules:1
Biological Source:Heterocephalus glaber
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):GNB2L1
Chain IDs:AC (auth: Sg)
Chain Length:317
Number of Molecules:1
Biological Source:Heterocephalus glaber
Primary Citation
Cryo-EM structure of the naked mole-rat ribosome reveals a stabilized split 28S rRNA.
Nat Commun 17 ? ? (2026)
PMID: 42399278 DOI: 10.1038/s41467-026-75143-0
Primary Citation of related structures
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