ISDA: 9T45

Deposition Date 2025-10-30

Release Date 2026-11-11

Last Version Date 2026-11-11

Entry Detail

PDB ID:

9T45

Keywords:

HYDROLASE

Title:

Crystal Structure of the NlpC/P60 Peptidase YkfC C200A Mutant from Bacillus subtilis with Bound Pentapeptide

Biological Source:

Source Organism(s):

Bacillus subtilis subsp. subtilis str. 168 (Taxon ID: 224308)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.72 Å

R-Value Free:

0.30

R-Value Work:

0.24

R-Value Observed:

0.24

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Gamma-D-glutamyl-L-lysine dip
Gene (Uniprot):ykfC
Chain IDs:A, B, C, D
Chain Length:304
Number of Molecules:4
Biological Source:Bacillus subtilis subsp. subtilis str. 168

UniProt ID:O35010 EC:3.4.14.13

Structural Superimposition Protein Blast

Polymer Type:polypeptide(D)
Molecule:Pentapeptide (ALA-DGL-LYS-DAL
Chain IDs:E, F, G, H
Chain Length:5
Number of Molecules:4
Biological Source:synthetic construct

Ligand Molecules

GOL

Primary Citation

Crystal Structure of the NlpC/P60 Peptidase YkfC from Bacillus subtilis

Voelpel, S.V, Mayer, C, Stehle, T.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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