ISDA: 9SFO

Deposition Date 2025-08-20

Release Date 2026-08-19

Last Version Date 2026-08-19

Entry Detail

PDB ID:

9SFO

Keywords:

TRANSFERASE

Title:

Crystal structure of nucleoside diphosphate kinase (NDK) from Streptococcus pneumoniae in complex with ADP and vanadate

Biological Source:

Source Organism(s):

Streptococcus pneumoniae R6 (Taxon ID: 171101)

Expression System(s):

Escherichia coli bl21(de3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.42 Å

R-Value Free:

0.26

R-Value Work:

0.20

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:Nucleoside diphosphate kinase
Chain IDs:A, B, C, D, E, F
Chain Length:145
Number of Molecules:6
Biological Source:Streptococcus pneumoniae R6

Ligand Molecules

ADP

VN4

VO4

Primary Citation

Quaternary structures of Streptococcus pneumoniae nucleoside diphosphate kinase: From hexamers to supramolecular assemblies.

Kerboeuf, J, Nouri, P, Galisson, F, Daury, L, Giraud, M.F, Lambert, O, Orelle, C, Ballut, L, Kaplan, E, Jault, J.M, Gonzalez, C.Show

Protein Sci. 35 e70735 e70735 (2026)

PMID: 42568346 DOI: 10.1002/pro.70735

Primary Citation of related structures

Feedback Form