ISDA: 9RFP

Deposition Date 2025-06-04

Release Date 2026-06-17

Last Version Date 2026-06-17

Entry Detail

PDB ID:

9RFP

Keywords:

HYDROLASE

Title:

Peptidedeformylase XisD in complex with formiate

Biological Source:

Source Organism(s):

Xenorhabdus hominickii (Taxon ID: 351679)

Expression System(s):

Escherichia coli bl21(de3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.65 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Peptide deformylase
Gene (Uniprot):def
Chain IDs:A, B
Chain Length:168
Number of Molecules:2
Biological Source:Xenorhabdus hominickii

UniProt ID:A0A1V0M4F3 EC:3.5.1.88

Ligand Molecules

FMT

GOL

Primary Citation

Identification and biosynthesis of xildivaline, a novel and widespread peptide deformylase inhibitor from Gammaproteobacteria

Rill, A, Westphalen, M, Lamberioux, M, Chekaiban, J, Mazel, D, Groll, M, Huber, E.M, Bode, H.B.Show

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Primary Citation of related structures

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