9QG7 image
Deposition Date 2025-03-13
Release Date 2026-07-22
Last Version Date 2026-08-12
Entry Detail
PDB ID:
9QG7
Keywords:
Title:
In situ structure of the Vaccinia virus (WR) portal complex in mature virions
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
8.21 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Portal protein E8
Gene (Uniprot):OPG070
Chain IDs:A, K, U, EA (auth: e), OA (auth: o), YA (auth: y)
Chain Length:272
Number of Molecules:6
Biological Source:Vaccinia virus WR
Polymer Type:polypeptide(L)
Molecule:Portal Protein E6
Gene (Uniprot):OPG068
Chain IDs:B, L, V, FA (auth: f), PA (auth: p), ZA (auth: z)
Chain Length:567
Number of Molecules:6
Biological Source:Vaccinia virus WR
Polymer Type:polypeptide(L)
Molecule:Portal Protein L3
Gene (Uniprot):OPG097
Chain IDs:C, D, M, N, W, X, GA (auth: g), HA (auth: h), QA (auth: q), RA (auth: r), AB (auth: 1), BB (auth: 2)
Chain Length:285
Number of Molecules:12
Biological Source:Vaccinia virus WR
Polymer Type:polypeptide(L)
Molecule:Core protein A10
Gene (Uniprot):OPG136
Chain IDs:E, G, I, O, Q, S, Y, AA (auth: a), CA (auth: c), IA (auth: i), KA (auth: k), MA (auth: m), SA (auth: s), UA (auth: u), WA (auth: w), CB (auth: 3), EB (auth: 5), GB (auth: 7)
Chain Length:594
Number of Molecules:18
Biological Source:Vaccinia virus WR
Polymer Type:polypeptide(L)
Molecule:Core protein A4
Gene (Uniprot):OPG130
Chain IDs:F, H, J, P, R, T, Z, BA (auth: b), DA (auth: d), JA (auth: j), LA (auth: l), NA (auth: n), TA (auth: t), VA (auth: v), XA (auth: x), DB (auth: 4), FB (auth: 6), HB (auth: 8)
Chain Length:43
Number of Molecules:18
Biological Source:Vaccinia virus WR
Ligand Molecules
Primary Citation
In situ structure of the poxvirus portal complex.
Nature ? ? ? (2026)
PMID: 42527601 DOI: 10.1038/s41586-026-10856-2

Abstact

Poxviruses are a family of large, complex double-stranded DNA viruses that includes human pathogens such as variola-the cause of smallpox-and monkeypox. Recent outbreaks of mpox underscore the need for a better understanding of poxvirus biology(1,2). Poxvirus assembly is a conserved process that involves the formation of a biconcave core inside the membrane of the maturing virus(3,4). Here we use cryo-electron tomography combined with subtomogram averaging and structure prediction to determine the structure and composition of the portal complex-a pore that spans the core wall-in vaccinia virus, the prototypical poxvirus. The hexameric complex consists of the E8, E6 and L3 proteins, which are conserved across poxviruses and essential for mRNA release during the establishment of infection(5-7). E6, which is also required for virus assembly(8-10), forms the central chamber of the portal and interacts with the surrounding core wall. A hexamer of E8 attaches to the exterior side of E6. L3, a target of TRIM5alpha-mediated restriction(11), binds as a hexamer of dimers to the interior side. Furthermore, the viral helicase D5, which is required for genome release from cores(12), associates with cytoplasmic cores during infection by docking onto the exterior E8 rim of the portal complex. We propose that the portal complex represents an attractive target for the development of anti-poxvirus therapeutics.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback