9PHC image
Deposition Date 2025-07-09
Release Date 2026-04-15
Last Version Date 2026-07-22
Entry Detail
PDB ID:
9PHC
Keywords:
Title:
In vitro reconstituted complex of purified S. pombe large ribosomal subunit and SNOR
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl42
Chain IDs:A (auth: B0)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl4301
Chain IDs:B (auth: B1)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polyribonucleotide
Molecule:28S ribosomal RNA
Chain IDs:C (auth: B2)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:D (auth: B3)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polyribonucleotide
Molecule:5.8S ribosomal RNA
Chain IDs:E (auth: B4)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl803
Chain IDs:F (auth: BN)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl301
Chain IDs:G (auth: BO)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl402
Chain IDs:H (auth: BP)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl502
Chain IDs:I (auth: BQ)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl6
Chain IDs:J (auth: BR)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl701
Chain IDs:K (auth: BS)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl8
Chain IDs:L (auth: BT)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl902
Chain IDs:M (auth: BU)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1001
Chain IDs:N (auth: BV)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1101
Chain IDs:O (auth: BW)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl13
Chain IDs:P (auth: BX)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl14
Chain IDs:Q (auth: BY)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1502
Chain IDs:R (auth: BZ)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1602
Chain IDs:S (auth: Ba)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1701
Chain IDs:T (auth: Bb)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1802
Chain IDs:U (auth: Bc)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl1902
Chain IDs:V (auth: Bd)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2001
Chain IDs:W (auth: Be)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2102
Chain IDs:X (auth: Bf)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl22
Chain IDs:Y (auth: Bg)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2302
Chain IDs:Z (auth: Bh)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2402
Chain IDs:AA (auth: Bi)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2501
Chain IDs:BA (auth: Bj)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl26
Chain IDs:CA (auth: Bk)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2701
Chain IDs:DA (auth: Bl)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl2801
Chain IDs:EA (auth: Bm)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl29
Chain IDs:FA (auth: Bn)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl3001
Chain IDs:GA (auth: Bo)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl31
Chain IDs:HA (auth: Bp)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl3202
Chain IDs:IA (auth: Bq)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl35b
Chain IDs:JA (auth: Br)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl3402
Chain IDs:KA (auth: Bs)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl35
Chain IDs:LA (auth: Bt)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl3602
Chain IDs:MA (auth: Bu)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl3702
Chain IDs:NA (auth: Bv)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl3801
Chain IDs:OA (auth: Bw)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl39
Chain IDs:PA (auth: Bx)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpl44
Chain IDs:QA (auth: By)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Polymer Type:polypeptide(L)
Molecule:SDO1-like protein C21C3.19
Gene (Uniprot):SPBC21C3.19
Chain IDs:RA (auth: HS)
Chain Length:0
Number of Molecules:1
Biological Source:Schizosaccharomyces pombe 972h-
Ligand Molecules
Primary Citation
SNOR promotes translation restart after dormancy.
Nature 655 516 524 (2026)
PMID: 42129552 DOI: 10.1038/s41586-026-10530-7

Abstact

Cellular dormancy enables survival during prolonged nutrient limitation by reversibly suppressing protein synthesis(1-4). How inactive eukaryotic ribosomes are reactivated when nutrients return remains unclear. Here, using high-resolution in situ cryo-electron tomography in Schizosaccharomyces pombe, we identify SNOR, an SBDS domain-containing ribosome-associated factor that binds at the peptidyl transferase centre and contacts the hypusinated loop of eIF5A during glucose depletion-induced dormancy. Rather than acting as a canonical hibernation factor, SNOR licenses dormant ribosomes for rapid translational restart. Upon glucose repletion, SNOR and eIF5A act together to promote efficient recovery of polysomes and exit from dormancy. These findings define a stress-responsive ribosome restart module that couples carbon-source limitation to surveillance of the ribosomal active site and reactivation of protein synthesis.

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Protein

Chemical

Disease

Primary Citation of related structures
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