ISDA: 9OZZ

Deposition Date 2025-06-06

Release Date 2026-04-15

Last Version Date 2026-04-15

Entry Detail

PDB ID:

9OZZ

Keywords:

RIBOSOME

Title:

Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.

Biological Source:

Source Organism(s):

Flavobacterium johnsoniae (Taxon ID: 986)

Expression System(s):

Flavobacterium johnsoniae

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.50 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:A (auth: 1)
Chain Length:2862
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polyribonucleotide
Molecule:16S rRNA
Chain IDs:B (auth: 2)
Chain Length:1520
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:C (auth: 3)
Chain Length:111
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L38
Chain IDs:D (auth: 4)
Chain Length:50
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S22
Chain IDs:E (auth: 5)
Chain Length:30
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polyribonucleotide
Molecule:rpsU mRNA
Chain IDs:F (auth: 6)
Chain Length:23
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polyribonucleotide
Molecule:fMet-tRNA
Chain IDs:G (auth: A)
Chain Length:84
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L2
Chain IDs:H (auth: B)
Chain Length:64
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L3
Chain IDs:I (auth: C)
Chain Length:205
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L4
Chain IDs:J (auth: D)
Chain Length:209
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L5
Chain IDs:K (auth: E)
Chain Length:65
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L6
Chain IDs:L (auth: F)
Chain Length:38
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L9
Chain IDs:M (auth: G)
Chain Length:146
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S2
Chain IDs:N (auth: H)
Chain Length:252
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L13
Chain IDs:O (auth: J)
Chain Length:151
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L14
Chain IDs:P (auth: K)
Chain Length:113
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L15
Chain IDs:Q (auth: L)
Chain Length:150
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L16
Chain IDs:R (auth: M)
Chain Length:141
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L17
Chain IDs:S (auth: N)
Chain Length:128
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L18
Chain IDs:T (auth: O)
Chain Length:101
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L19
Chain IDs:U (auth: P)
Chain Length:116
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L20
Chain IDs:V (auth: Q)
Chain Length:114
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L21
Chain IDs:W (auth: R)
Chain Length:124
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L22
Chain IDs:X (auth: S)
Chain Length:137
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L23
Chain IDs:Y (auth: T)
Chain Length:88
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L24
Chain IDs:Z (auth: U)
Chain Length:188
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L25
Chain IDs:AA (auth: V)
Chain Length:86
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L27
Chain IDs:BA (auth: W)
Chain Length:98
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L28
Chain IDs:CA (auth: X)
Chain Length:78
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L29
Chain IDs:DA (auth: Y)
Chain Length:63
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L30
Chain IDs:EA (auth: Z)
Chain Length:60
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L31
Chain IDs:FA (auth: a)
Chain Length:84
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L32
Chain IDs:GA (auth: b)
Chain Length:64
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L33
Chain IDs:HA (auth: c)
Chain Length:205
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L34
Chain IDs:IA (auth: d)
Chain Length:209
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L35
Chain IDs:JA (auth: e)
Chain Length:65
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L36
Chain IDs:KA (auth: f)
Chain Length:38
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S3
Chain IDs:LA (auth: h)
Chain Length:252
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S4
Chain IDs:MA (auth: i)
Chain Length:201
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S5
Chain IDs:NA (auth: j)
Chain Length:151
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S6
Chain IDs:OA (auth: k)
Chain Length:113
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S7
Chain IDs:PA (auth: l)
Chain Length:150
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S8
Chain IDs:QA (auth: m)
Chain Length:141
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S9
Chain IDs:RA (auth: n)
Chain Length:128
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S10
Chain IDs:SA (auth: o)
Chain Length:101
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S11
Chain IDs:TA (auth: p)
Chain Length:116
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S12
Chain IDs:UA (auth: q)
Chain Length:114
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S13
Chain IDs:VA (auth: r)
Chain Length:124
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S14
Chain IDs:WA (auth: s)
Chain Length:137
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S15
Chain IDs:XA (auth: t)
Chain Length:88
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S16
Chain IDs:YA (auth: u)
Chain Length:188
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S17
Chain IDs:ZA (auth: v)
Chain Length:86
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S18
Chain IDs:AB (auth: w)
Chain Length:98
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S19
Chain IDs:BB (auth: x)
Chain Length:78
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Polymer Type:polypeptide(L)
Molecule:30S ribosomal protein S20
Chain IDs:CB (auth: y)
Chain Length:63
Number of Molecules:1
Biological Source:Flavobacterium johnsoniae

Ligand Molecules

Primary Citation

Structure of a specialized 70S initiation complex.

Arpin, D, Roy, B, Naeem, F.M, Fredrick, K, Ortega, J.Show

Nucleic Acids Res. 54 ? ? (2026)

PMID: 41854077 DOI: 10.1093/nar/gkag094

Primary Citation of related structures

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