9OKD image
Deposition Date 2025-05-09
Release Date 2026-06-17
Last Version Date 2026-06-17
Entry Detail
PDB ID:
9OKD
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Biological Source:
Source Organism(s):
Bombyx mori (Taxon ID: 7091)
synthetic construct (Taxon ID: 32630)
Expression System(s):
Trichoplusia ni
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.83 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9OKD validation report missing
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CS-1
Chain IDs:J (auth: A)
Chain Length:95
Number of Molecules:1
Biological Source:Bombyx mori
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CS-2
Chain IDs:M (auth: B)
Chain Length:82
Number of Molecules:1
Biological Source:Bombyx mori
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DAD4
Chain IDs:K (auth: C)
Chain Length:72
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2AV77
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CS-4
Chain IDs:L (auth: D)
Chain Length:81
Number of Molecules:1
Biological Source:Bombyx mori
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (36-MER)
Chain IDs:N (auth: G)
Chain Length:36
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bmCENP-H
Chain IDs:A (auth: H)
Chain Length:239
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2AFF4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere protein I
Chain IDs:C (auth: I)
Chain Length:661
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2LUB8 Pfam ID:PF07778
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (36-MER)
Chain IDs:O (auth: J)
Chain Length:36
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bmCENP-K
Chain IDs:B (auth: K)
Chain Length:219
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2AP23
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere protein L
Gene (Uniprot):CYP340
Chain IDs:E (auth: L)
Chain Length:302
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:H9IXB1 Pfam ID:PF13092
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere protein M
Gene (Uniprot):101745870
Chain IDs:D (auth: M)
Chain Length:180
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2ARQ0 Pfam ID:PF11111
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bmCENP-N
Chain IDs:F (auth: N)
Chain Length:328
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R1WGT7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Centromere protein O
Chain IDs:G (auth: O)
Chain Length:325
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2AFZ4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bmCENP-P
Chain IDs:H (auth: P)
Chain Length:638
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R1WGN9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bmCENP-T
Chain IDs:I (auth: T)
Chain Length:1016
Number of Molecules:1
Biological Source:Bombyx mori
UniProt ID:A0A8R2HRP3
Ligand Molecules
NA
Primary Citation
Architecture and Function of Holocentric CENP-A-Independent Inner Kinetochores
To Be Published ? ? ? (?)
Primary Citation of related structures
9OKD
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