ISDA: 9NO1

Deposition Date 2025-03-07

Release Date 2025-07-30

Last Version Date 2026-04-15

Entry Detail

PDB ID:

9NO1

Keywords:

VIRUS

Title:

Cryo-ET map of the VZV capsid vertex (5-fold axis).

Biological Source:

Source Organism(s):

Human alphaherpesvirus 3 (Taxon ID: 10335)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

8.30 Å

Aggregation State:

CELL

Reconstruction Method:

SUBTOMOGRAM AVERAGING

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ORF40
Gene (Uniprot):ORF40
Chain IDs:A, B, D, F, H, J, L
Chain Length:1396
Number of Molecules:7
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQT5 Pfam ID:PF03122

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small capsomere-interacting p
Gene (Uniprot):ORF23
Chain IDs:C, E, G, I, K, M
Chain Length:235
Number of Molecules:6
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQV2 Pfam ID:PF04496

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ORF20
Gene (Uniprot):ORF20
Chain IDs:N, Q
Chain Length:483
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQV5 Pfam ID:PF03327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ORF41
Gene (Uniprot):ORF41
Chain IDs:O, P, R, S
Chain Length:316
Number of Molecules:4
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQT4 Pfam ID:PF01802

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ORF43
Gene (Uniprot):ORF43
Chain IDs:T
Chain Length:676
Number of Molecules:1
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQT2 Pfam ID:PF04559

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ORF34
Gene (Uniprot):ORF34
Chain IDs:U, V
Chain Length:579
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQU1 Pfam ID:PF01499

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large tegument protein denedd
Gene (Uniprot):ORF22
Chain IDs:W, X
Chain Length:2763
Number of Molecules:2
Biological Source:Human alphaherpesvirus 3

UniProt ID:Q4JQX9 Pfam ID:PF04843, PF03586

Ligand Molecules

Primary Citation

Cryogenic electron tomography reveals herpesvirus capsid assembly intermediates inside the cell nucleus.

Oliver, S.L, Chen, M, Engel, L, Hecksel, C.W, Zhou, X, Schmid, M.F, Arvin, A.M, Chiu, W.Show

Nat Commun 17 ? ? (2026)

PMID: 41741463 DOI: 10.1038/s41467-026-69811-4

Primary Citation of related structures

Feedback Form