9MRS image
Deposition Date 2025-01-08
Release Date 2026-03-18
Last Version Date 2026-09-30
Entry Detail
PDB ID:
9MRS
Keywords:
Title:
Crystal structure of human MMACHC in complex with MMADHC and B12
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.35
R-Value Work:
0.3
R-Value Observed:
0.3
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyanocobalamin reductase / al
Gene (Uniprot):MMACHC
Chain IDs:A, C (auth: B), D (auth: E), F (auth: G)
Chain Length:223
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cobalamin trafficking protein
Gene (Uniprot):MMADHC
Chain IDs:B (auth: D), E (auth: F), G (auth: C), H
Chain Length:296
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
An unusual Co-S bond links B 12 chaperones in an interprotein complex.
Proc.Natl.Acad.Sci.USA 122 e2507700122 e2507700122 (2025)
PMID: 40996799 DOI: 10.1073/pnas.2507700122

Abstact

Chaperones in trafficking pathways ensure specificity of transition metal loading and protection against adventitious side reactions. In B(12), an essential cofactor for humans, a cobalt ion is coordinated to a >1.3 kDa tetrapyrrolic scaffold, posing logistical challenges for its translocation. In this study, we report the 3.4 A crystal structure of the human MMACHC and MMADHC B(12) chaperones, tethered via a rarely seen covalent cobalt-sulfur bond. B(12) is bound in the base-off state to MMACHC, with Cys-261 on MMADHC serving as the upper axial ligand; the lower-axial position is vacant. The propensity of thiolato-cobalamin derivatives bound to MMACHC to undergo spontaneous decomposition via general acid catalysis or reduction/oxidation chemistry is averted in the interprotein complex with MMADHC. An exposed face in the complex suggests an exit route for B(12). No known clinical variants localize to the interprotein interface, consistent with the cobalt-sulfur bond being key to forming the high-affinity complex.

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Primary Citation of related structures
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