9L8V image
Deposition Date 2024-12-28
Release Date 2025-12-31
Last Version Date 2026-07-29
Entry Detail
PDB ID:
9L8V
Keywords:
Title:
PyrN C-terminl domain in complex with L-glutamyl-sulfamoyl-adenosine (GSA)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Methionine-tRNA ligase
Gene (Uniprot):pyrN
Chain IDs:A, B, C (auth: D), D (auth: B00Z)
Chain Length:546
Number of Molecules:4
Biological Source:Streptomyces candidus
Primary Citation
Structural and Mechanistic Insights into Bacterial Hydrazine Biosynthesis.
J.Am.Chem.Soc. 147 42984 42993 (2025)
PMID: 41191408 DOI: 10.1021/jacs.5c15949

Abstact

Nitrogen-nitrogen (N-N) bond-containing motifs are prevalent in both clinical drugs and natural products. Bacterial hydrazine synthetases catalyze N-N bond formation by coupling an amino acid and a hydroxylamine via a distinctive O-aminoacyl-hydroxylamine intermediate. Despite its wide occurrence, the structural and mechanistic basis of this process has remained elusive. Here, we report the first crystal structures of the O-aminoacyl-hydroxylamine synthetase (aaHS) component of a bacterial hydrazine synthetase, captured in binary and ternary complexes with substrates and catalytic intermediates. These structures reveal the molecular determinants of substrate recognition and, together with biochemical and computational analyses, establish a detailed mechanistic framework for the hydrazine synthetase family. Leveraging these insights, we expanded hydrazine biosynthesis through the targeted discovery of novel hydrazine synthetases and implemented a chemoenzymatic synthesis strategy. This work provides fundamental insights into hydrazine synthetases and lays the groundwork for their rational engineering as versatile biocatalysts.

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