9K7V image
Deposition Date 2024-10-24
Release Date 2026-02-25
Last Version Date 2026-10-07
Entry Detail
PDB ID:
9K7V
Keywords:
Title:
Structural insights into photosystem II supercomplex of a a siphonous green algae Bryopsis corticulans from intertidal zone
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.07 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lhcb1
Chain IDs:J (auth: 1), IA (auth: 4)
Chain Length:212
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Lhcb2
Chain IDs:K (auth: 2), JA (auth: 5)
Chain Length:256
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Lhcb3
Chain IDs:L (auth: 3), R (auth: 9), KA (auth: 6), PA (auth: u), SA (auth: p), BB (auth: 7)
Chain Length:254
Number of Molecules:6
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:PsbA
Chain IDs:W (auth: A), WA (auth: a)
Chain Length:327
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction
Gene (Uniprot):psbB
Chain IDs:V (auth: B), VA (auth: b)
Chain Length:508
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction
Gene (Uniprot):psbC
Chain IDs:X (auth: C), XA (auth: c)
Chain Length:461
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:Y (auth: D), YA (auth: d)
Chain Length:352
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:B (auth: E), BA (auth: e)
Chain Length:82
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:I (auth: F), HA (auth: f)
Chain Length:42
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:LhcbG
Chain IDs:Q (auth: G), S (auth: N), T (auth: Y), U (auth: 8), OA (auth: g), QA (auth: n), RA (auth: y), TA (auth: q)
Chain Length:280
Number of Molecules:8
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbH
Chain IDs:C (auth: H), CA (auth: h)
Chain Length:75
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbI
Chain IDs:D (auth: I), DA (auth: i)
Chain Length:36
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbK
Chain IDs:E (auth: K), EA (auth: k)
Chain Length:43
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbL
Chain IDs:F (auth: L), FA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbM
Chain IDs:G (auth: M), GA (auth: m)
Chain Length:33
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:PsbR
Chain IDs:H (auth: R), AB (auth: r)
Chain Length:267
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:LhcbS
Chain IDs:M (auth: S), ZA (auth: s)
Chain Length:308
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbT
Chain IDs:P (auth: T), NA (auth: t)
Chain Length:31
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):ycf12
Chain IDs:O (auth: V), MA (auth: v)
Chain Length:33
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:PsbW
Chain IDs:Z (auth: W), UA (auth: w)
Chain Length:118
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:PsbX
Chain IDs:N (auth: X), LA (auth: x)
Chain Length:109
Number of Molecules:2
Biological Source:Bryopsis corticulans
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction cente
Gene (Uniprot):psbZ
Chain IDs:A (auth: Z), AA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Bryopsis corticulans
Primary Citation
Cryo-EM structural analyses of chlorophyll b-enriched PSI-LHC and PSII-LHC supercomplexes of the siphonous green alga Bryopsis corticulans.
Plant Commun. 7 101738 101738 (2026)
PMID: 41578646 DOI: 10.1016/j.xplc.2026.101738

Abstact

The light-harvesting complexes of photosystem I (PSI) and PSII (LHCI and LHCII) in Bryopsis corticulans (B. corticulans) are homologous to those in Chlamydomonas reinhardtii and land plants but exhibit a distinct chlorophyll (Chl) and carotenoid composition. Here, we report cryo-electron microscopy structures of the PSI-LHCI(10)-LHCII(9) supercomplex, comprising three LHCII trimers, and the C(2)S(2)M(2)N(2)-type PSII-LHCII supercomplex from B. corticulans. In the PSI supercomplex, ten LHCI subunits assemble into two belts and one heterodimer, coordinating a total of 86 Chl a and 65 Chl b molecules (Chl a/b ratio of 1.3, compared with 3.4 in C. reinhardtii), as well as 18 siphonaxanthin, 2 siphonein, and 13 alpha-carotene molecules. Of the three LHCII trimers bound to the PSI-LHCI supercomplex, two are anchored to the PSI core primarily via phosphorylated subunits, whereas the third, non-phosphorylated trimer is stabilized through interactions with Lhca-d and the adjacent LHCII trimer. In the C(2)S(2)M(2)N(2)-type PSII-LHCII supercomplex, the N-LHCII is positioned closer to the PSII core than in C. reinhardtii, likely owing to loss of the linker motif in the N-terminal region of B. corticulans CP29. Structure-based energy transfer analysis suggests that this spatial rearrangement enhances the efficiency of excitation energy transfer from N-LHCII to the PSII core. Collectively, these findings reveal structural adaptations that underlie the acclimation strategies of siphonous green algae inhabiting intertidal environments.

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Primary Citation of related structures
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