ISDA: 9I88

Deposition Date 2025-02-04

Release Date 2026-04-15

Last Version Date 2026-04-15

Entry Detail

PDB ID:

9I88

Keywords:

RIBOSOME

Title:

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Biological Source:

Source Organism(s):

Staphylococcus aureus (Taxon ID: 1280)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.98 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmB
Chain IDs:A (auth: 1)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FHL4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmC
Chain IDs:B (auth: 2)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A8Z349

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmD
Chain IDs:C (auth: 3)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmE2
Chain IDs:VA (auth: 4)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FF08

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmF
Chain IDs:D (auth: 5)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FHV3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmG1
Chain IDs:E (auth: 6)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FYU6 Pfam ID:PF00471

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmH
Chain IDs:F (auth: 7)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FDE6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmI
Chain IDs:G (auth: 8)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FG57

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmJ
Chain IDs:H (auth: 9)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FER2

Polymer Type:polyribonucleotide
Molecule:23S ribosomal RNA
Chain IDs:WA (auth: A)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polyribonucleotide
Molecule:5S ribosomal RNA
Chain IDs:I (auth: B)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polyribonucleotide
Molecule:fMet-P-tRNA
Chain IDs:J (auth: D)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplB
Chain IDs:K (auth: G)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplC
Chain IDs:L (auth: H)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEN9

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplD
Chain IDs:M (auth: I)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplE
Chain IDs:N (auth: J)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplF
Chain IDs:O (auth: K)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplM
Chain IDs:P (auth: M)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FES1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplN
Chain IDs:Q (auth: N)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP9

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplO
Chain IDs:R (auth: O)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplP
Chain IDs:S (auth: P)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplQ
Chain IDs:T (auth: Q)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FER6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplR
Chain IDs:U (auth: R)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ5

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplS
Chain IDs:V (auth: S)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FHJ7

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplT
Chain IDs:W (auth: T)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FG58

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplU
Chain IDs:X (auth: U)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FG80

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplV
Chain IDs:Y (auth: V)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplW
Chain IDs:Z (auth: W)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP1

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rplX
Chain IDs:AA (auth: X)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L25
Gene (Uniprot):rplY
Chain IDs:BA (auth: Y)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FJE0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit prote
Gene (Uniprot):rpmA
Chain IDs:CA (auth: Z)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FG82

Polymer Type:polyribonucleotide
Molecule:16S ribosomal RNA
Chain IDs:XA (auth: a)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsB
Chain IDs:DA (auth: c)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FHI2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsC
Chain IDs:EA (auth: d)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP5

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsD
Chain IDs:FA (auth: e)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FG18

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsE
Chain IDs:GA (auth: f)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsF
Chain IDs:HA (auth: g)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FJP8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsG
Chain IDs:YA (auth: h)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FJ94

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsH
Chain IDs:IA (auth: i)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsI
Chain IDs:JA (auth: j)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:A6QJ59

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsJ
Chain IDs:KA (auth: k)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEN8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsK
Chain IDs:LA (auth: l)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FER4

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsL
Chain IDs:MA (auth: m)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FJ95

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsM
Chain IDs:NA (auth: n)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FER3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsZ
Chain IDs:OA (auth: o)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEQ2

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsO
Chain IDs:PA (auth: p)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FHG5

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsP
Chain IDs:QA (auth: q)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FHK0

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsQ
Chain IDs:RA (auth: r)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP8

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsR
Chain IDs:SA (auth: s)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FJP6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsS
Chain IDs:TA (auth: t)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FEP3

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit prote
Gene (Uniprot):rpsT
Chain IDs:UA (auth: u)
Chain Length:0
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q2FGD8

Ligand Molecules