9HYU image
Deposition Date 2025-01-10
Release Date 2026-01-28
Last Version Date 2026-03-18
Entry Detail
PDB ID:
9HYU
Keywords:
Title:
Cryo-EM structure of the Chromera velia PSI supercomplex at 1.84 Angstrom resolution
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.84 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Fe]
Gene (Uniprot):Cvel_7136
Chain IDs:A (auth: 1)
Chain Length:370
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Fe]
Gene (Uniprot):Cvel_3019
Chain IDs:B (auth: 2)
Chain Length:267
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:photosystem I
Gene (Uniprot):psaA
Chain IDs:C (auth: A)
Chain Length:280
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I protein (PsaB)
Gene (Uniprot):psaB
Chain IDs:S (auth: B)
Chain Length:1139
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur cen
Gene (Uniprot):psaC
Chain IDs:D (auth: C)
Chain Length:80
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center
Gene (Uniprot):Cvel_25206
Chain IDs:E (auth: D)
Chain Length:222
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center
Gene (Uniprot):Cvel_5788
Chain IDs:F (auth: E)
Chain Length:217
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center
Gene (Uniprot):Cvel_23764
Chain IDs:G (auth: F)
Chain Length:326
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I protein (PsaI)
Gene (Uniprot):Cvel_6643
Chain IDs:H (auth: I)
Chain Length:211
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center
Gene (Uniprot):Cvel_23765
Chain IDs:I (auth: L)
Chain Length:277
Number of Molecules:1
Biological Source:Chromera velia
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I protein (PsaM)
Chain IDs:J (auth: M)
Chain Length:195
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I protein (PsaR)
Gene (Uniprot):Cvel_3217
Chain IDs:K (auth: R)
Chain Length:202
Number of Molecules:1
Biological Source:Chromera velia
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyl
Chain IDs:R (auth: a)
Chain Length:280
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Plastid light harvesting prot
Gene (Uniprot):Cvel_13255
Chain IDs:L (auth: b)
Chain Length:1139
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Plastid light harvesting prot
Gene (Uniprot):Cvel_3431
Chain IDs:M (auth: c)
Chain Length:80
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Plastid light harvesting prot
Gene (Uniprot):Cvel_7599
Chain IDs:N (auth: d)
Chain Length:222
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Plastid light harvesting prot
Gene (Uniprot):Cvel_1169
Chain IDs:O (auth: e)
Chain Length:217
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding prote
Gene (Uniprot):Cvel_9928
Chain IDs:P (auth: f)
Chain Length:326
Number of Molecules:1
Biological Source:Chromera velia
Polymer Type:polypeptide(L)
Molecule:Photosystem I protein (PsaV)
Gene (Uniprot):Cvel_30781
Chain IDs:Q (auth: u)
Chain Length:424
Number of Molecules:1
Biological Source:Chromera velia
Primary Citation
The cryo-EM structure of Photosystem I from Chromera velia with a bound superoxide dismutase heterodimer.
Nat Commun 17 913 913 (2025)
PMID: 41423677 DOI: 10.1038/s41467-025-67637-0

Abstact

Photosystem I is a key component of the solar energy conversion machinery in oxygenic photosynthesis, and its core, where photochemistry occurs, is highly conserved. However, the coral-associated alga Chromera velia that is evolutionary linked to parasitic apicomplexans, exhibits Photosystem I with unusual features. These include the splitting of the central PsaA subunit and the binding of superoxide dismutases as regular subunits. The organization of such a unique Photosystem I was enigmatic. Here, we present the cryo-EM structure of Chromera velia Photosystem I at 1.84 A resolution. Our work reveals a superoxide dismutase heterodimer bound to the stromal side of the core, stabilized by extensions of canonical subunits, a novel protein PsaV, and a reduced light-harvesting apparatus. We elucidate how the complex evolved to accommodate the superoxide dismutase, assemble the split PsaA, and integrate antenna proteins in a non-canonical orientation. Based on our data and prior physiological data, we propose that this specialized Photosystem I functions likely as an Mehler machine, redirecting electrons from Photosystem II back to water. This mechanism enables Chromera velia to manage redox imbalance and reduce photorespiration through localized oxygen consumption.

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