9H6V image
Deposition Date 2024-10-25
Release Date 2025-07-16
Last Version Date 2026-10-28
Entry Detail
PDB ID:
9H6V
Keywords:
Title:
Lotus japonicus CERK6 extracellular domain in complex with two nanobodies
Biological Source:
Source Organism(s):
Lotus japonicus (Taxon ID: 34305)
Lama glama (Taxon ID: 9844)
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LysM type receptor kinase
Gene (Uniprot):LYS6
Chain IDs:A, B
Chain Length:204
Number of Molecules:2
Biological Source:Lotus japonicus
Polymer Type:polypeptide(L)
Molecule:Nb-aCERK6-1
Chain IDs:E (auth: D), F (auth: C)
Chain Length:133
Number of Molecules:2
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Molecule:Nb-aCERK6-2
Chain IDs:C (auth: E), D (auth: F)
Chain Length:133
Number of Molecules:2
Biological Source:Lama glama
Primary Citation
Structural basis for size-selective perception of chitin in plants.
Science 394 298 305 (2026)
PMID: 42879538 DOI: 10.1126/science.adz4600

Abstact

Plants detect microbes through pattern recognition receptors that perceive conserved microbial surface motifs known as microbe-associated molecular patterns (MAMPs). Lysin motif (LysM) receptors recognize and mediate downstream responses to chitinous MAMPs. In this study, we elucidated the mechanism for the specific recognition of long-chain chitin oligomers and identified a hallmark bridge domain characteristic of the CHITIN PERCEPTION (CHIP) receptor class. Structural analysis of receptor-ligand complexes, biochemistry, and in planta functional studies of inhibitory nanobodies revealed the mechanism of size-selective, high-affinity chitin perception in Lotus japonicus and Medicago truncatula. Additionally, we identified the CHITIN ELICITOR RECEPTOR KINASE (CERK) class as low-affinity, yet essential, co-receptors and propose a mechanistic model for a ligand-induced core signaling heterocomplex. Our findings establish the structural and mechanistic basis of differential chitin perception and receptor complex assembly in chitin-elicited plant immune signaling.

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