ISDA: 28RO

Deposition Date 2026-02-16

Release Date 2026-04-29

Last Version Date 2026-04-29

Entry Detail

PDB ID:

28RO

Keywords:

VIRUS LIKE PARTICLE

Title:

split variant of Aquifex aeolicus lumazine synthase-derived nucleocapsid variant NC-4

Biological Source:

Source Organism(s):

Aquifex aeolicus (Taxon ID: 63363)

Expression System(s):

Escherichia coli bl21(de3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.10 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:6,7-dimethyl-8-ribityllumazin
Gene (Uniprot):ribH
Chain IDs:A (auth: 0A), B (auth: 0B), C (auth: 0C), D (auth: 0D), I (auth: 1A), J (auth: 1B), K (auth: 1C), L (auth: 1D), Q (auth: 2A), R (auth: 2B), S (auth: 2C), T (auth: 2D), Y (auth: 3A), Z (auth: 3B), AA (auth: 3C), BA (auth: 3D), GA (auth: 4A), HA (auth: 4B), IA (auth: 4C), JA (auth: 4D), OA (auth: 5A), PA (auth: 5B), QA (auth: 5C), RA (auth: 5D), WA (auth: 6A), XA (auth: 6B), YA (auth: 6C), ZA (auth: 6D), EB (auth: 7A), FB (auth: 7B), GB (auth: 7C), HB (auth: 7D), MB (auth: AA), NB (auth: AB), OB (auth: AC), PB (auth: AD), UB (auth: BA), VB (auth: BB), WB (auth: BC), XB (auth: BD), CC (auth: CA), DC (auth: CB), EC (auth: CC), FC (auth: CD), KC (auth: DA), LC (auth: DB), MC (auth: DC), NC (auth: DD), SC (auth: EA), TC (auth: EB), UC (auth: EC), VC (auth: ED), AD (auth: FA), BD (auth: FB), CD (auth: FC), DD (auth: FD), ID (auth: GA), JD (auth: GB), KD (auth: GC), LD (auth: GD), QD (auth: HA), RD (auth: HB), SD (auth: HC), TD (auth: HD), YD (auth: IA), ZD (auth: IB), AE (auth: IC), BE (auth: ID), GE (auth: JA), HE (auth: JB), IE (auth: JC), JE (auth: JD), OE (auth: KA), PE (auth: KB), QE (auth: KC), RE (auth: KD), WE (auth: LA), XE (auth: LB), YE (auth: LC), ZE (auth: LD), EF (auth: MA), FF (auth: MB), GF (auth: MC), HF (auth: MD), MF (auth: NA), NF (auth: NB), OF (auth: NC), PF (auth: ND), UF (auth: OA), VF (auth: OB), WF (auth: OC), XF (auth: OD), CG (auth: PA), DG (auth: PB), EG (auth: PC), FG (auth: PD), KG (auth: QA), LG (auth: QB), MG (auth: QC), NG (auth: QD), SG (auth: RA), TG (auth: RB), UG (auth: RC), VG (auth: RD), AH (auth: SA), BH (auth: SB), CH (auth: SC), DH (auth: SD), IH (auth: TA), JH (auth: TB), KH (auth: TC), LH (auth: TD), QH (auth: UA), RH (auth: UB), SH (auth: UC), TH (auth: UD), YH (auth: VA), ZH (auth: VB), AI (auth: VC), BI (auth: VD), GI (auth: WA), HI (auth: WB), II (auth: WC), JI (auth: WD), OI (auth: XA), PI (auth: XB), QI (auth: XC), RI (auth: XD), WI (auth: YA), XI (auth: YB), YI (auth: YC), ZI (auth: YD), EJ (auth: ZA), FJ (auth: ZB), GJ (auth: ZC), HJ (auth: ZD), MJ (auth: aA), NJ (auth: aB), OJ (auth: aC), PJ (auth: aD), UJ (auth: bA), VJ (auth: bB), WJ (auth: bC), XJ (auth: bD), CK (auth: cA), DK (auth: cB), EK (auth: cC), FK (auth: cD), KK (auth: dA), LK (auth: dB), MK (auth: dC), NK (auth: dD), SK (auth: eA), TK (auth: eB), UK (auth: eC), VK (auth: eD), AL (auth: fA), BL (auth: fB), CL (auth: fC), DL (auth: fD), IL (auth: gA), JL (auth: gB), KL (auth: gC), LL (auth: gD), QL (auth: hA), RL (auth: hB), SL (auth: hC), TL (auth: hD), YL (auth: iA), ZL (auth: iB), AM (auth: iC), BM (auth: iD), GM (auth: jA), HM (auth: jB), IM (auth: jC), JM (auth: jD), OM (auth: kA), PM (auth: kB), QM (auth: kC), RM (auth: kD), WM (auth: lA), XM (auth: lB), YM (auth: lC), ZM (auth: lD), EN (auth: mA), FN (auth: mB), GN (auth: mC), HN (auth: mD), MN (auth: nA), NN (auth: nB), ON (auth: nC), PN (auth: nD), UN (auth: oA), VN (auth: oB), WN (auth: oC), XN (auth: oD), CO (auth: pA), DO (auth: pB), EO (auth: pC), FO (auth: pD), KO (auth: qA), LO (auth: qB), MO (auth: qC), NO (auth: qD), SO (auth: rA), TO (auth: rB), UO (auth: rC), VO (auth: rD), AP (auth: sA), BP (auth: sB), CP (auth: sC), DP (auth: sD), IP (auth: tA), JP (auth: tB), KP (auth: tC), LP (auth: tD), QP (auth: uA), RP (auth: uB), SP (auth: uC), TP (auth: uD), YP (auth: vA), ZP (auth: vB), AQ (auth: vC), BQ (auth: vD), GQ (auth: wA), HQ (auth: wB), IQ (auth: wC), JQ (auth: wD), OQ (auth: xA), PQ (auth: xB), QQ (auth: xC), RQ (auth: xD), WQ (auth: yA), XQ (auth: yB), YQ (auth: yC), ZQ (auth: yD), ER (auth: zA), FR (auth: zB), GR (auth: zC), HR (auth: zD)
Chain Length:86
Number of Molecules:240
Biological Source:Aquifex aeolicus

UniProt ID:O66529 EC:2.5.1.78

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:6,7-dimethyl-8-ribityllumazin
Gene (Uniprot):ribH
Chain IDs:E (auth: 0a), F (auth: 0b), G (auth: 0c), H (auth: 0d), M (auth: 1a), N (auth: 1b), O (auth: 1c), P (auth: 1d), U (auth: 2a), V (auth: 2b), W (auth: 2c), X (auth: 2d), CA (auth: 3a), DA (auth: 3b), EA (auth: 3c), FA (auth: 3d), KA (auth: 4a), LA (auth: 4b), MA (auth: 4c), NA (auth: 4d), SA (auth: 5a), TA (auth: 5b), UA (auth: 5c), VA (auth: 5d), AB (auth: 6a), BB (auth: 6b), CB (auth: 6c), DB (auth: 6d), IB (auth: 7a), JB (auth: 7b), KB (auth: 7c), LB (auth: 7d), QB (auth: Aa), RB (auth: Ab), SB (auth: Ac), TB (auth: Ad), YB (auth: Ba), ZB (auth: Bb), AC (auth: Bc), BC (auth: Bd), GC (auth: Ca), HC (auth: Cb), IC (auth: Cc), JC (auth: Cd), OC (auth: Da), PC (auth: Db), QC (auth: Dc), RC (auth: Dd), WC (auth: Ea), XC (auth: Eb), YC (auth: Ec), ZC (auth: Ed), ED (auth: Fa), FD (auth: Fb), GD (auth: Fc), HD (auth: Fd), MD (auth: Ga), ND (auth: Gb), OD (auth: Gc), PD (auth: Gd), UD (auth: Ha), VD (auth: Hb), WD (auth: Hc), XD (auth: Hd), CE (auth: Ia), DE (auth: Ib), EE (auth: Ic), FE (auth: Id), KE (auth: Ja), LE (auth: Jb), ME (auth: Jc), NE (auth: Jd), SE (auth: Ka), TE (auth: Kb), UE (auth: Kc), VE (auth: Kd), AF (auth: La), BF (auth: Lb), CF (auth: Lc), DF (auth: Ld), IF (auth: Ma), JF (auth: Mb), KF (auth: Mc), LF (auth: Md), QF (auth: Na), RF (auth: Nb), SF (auth: Nc), TF (auth: Nd), YF (auth: Oa), ZF (auth: Ob), AG (auth: Oc), BG (auth: Od), GG (auth: Pa), HG (auth: Pb), IG (auth: Pc), JG (auth: Pd), OG (auth: Qa), PG (auth: Qb), QG (auth: Qc), RG (auth: Qd), WG (auth: Ra), XG (auth: Rb), YG (auth: Rc), ZG (auth: Rd), EH (auth: Sa), FH (auth: Sb), GH (auth: Sc), HH (auth: Sd), MH (auth: Ta), NH (auth: Tb), OH (auth: Tc), PH (auth: Td), UH (auth: Ua), VH (auth: Ub), WH (auth: Uc), XH (auth: Ud), CI (auth: Va), DI (auth: Vb), EI (auth: Vc), FI (auth: Vd), KI (auth: Wa), LI (auth: Wb), MI (auth: Wc), NI (auth: Wd), SI (auth: Xa), TI (auth: Xb), UI (auth: Xc), VI (auth: Xd), AJ (auth: Ya), BJ (auth: Yb), CJ (auth: Yc), DJ (auth: Yd), IJ (auth: Za), JJ (auth: Zb), KJ (auth: Zc), LJ (auth: Zd), QJ (auth: aa), RJ (auth: ab), SJ (auth: ac), TJ (auth: ad), YJ (auth: ba), ZJ (auth: bb), AK (auth: bc), BK (auth: bd), GK (auth: ca), HK (auth: cb), IK (auth: cc), JK (auth: cd), OK (auth: da), PK (auth: db), QK (auth: dc), RK (auth: dd), WK (auth: ea), XK (auth: eb), YK (auth: ec), ZK (auth: ed), EL (auth: fa), FL (auth: fb), GL (auth: fc), HL (auth: fd), ML (auth: ga), NL (auth: gb), OL (auth: gc), PL (auth: gd), UL (auth: ha), VL (auth: hb), WL (auth: hc), XL (auth: hd), CM (auth: ia), DM (auth: ib), EM (auth: ic), FM (auth: id), KM (auth: ja), LM (auth: jb), MM (auth: jc), NM (auth: jd), SM (auth: ka), TM (auth: kb), UM (auth: kc), VM (auth: kd), AN (auth: la), BN (auth: lb), CN (auth: lc), DN (auth: ld), IN (auth: ma), JN (auth: mb), KN (auth: mc), LN (auth: md), QN (auth: na), RN (auth: nb), SN (auth: nc), TN (auth: nd), YN (auth: oa), ZN (auth: ob), AO (auth: oc), BO (auth: od), GO (auth: pa), HO (auth: pb), IO (auth: pc), JO (auth: pd), OO (auth: qa), PO (auth: qb), QO (auth: qc), RO (auth: qd), WO (auth: ra), XO (auth: rb), YO (auth: rc), ZO (auth: rd), EP (auth: sa), FP (auth: sb), GP (auth: sc), HP (auth: sd), MP (auth: ta), NP (auth: tb), OP (auth: tc), PP (auth: td), UP (auth: ua), VP (auth: ub), WP (auth: uc), XP (auth: ud), CQ (auth: va), DQ (auth: vb), EQ (auth: vc), FQ (auth: vd), KQ (auth: wa), LQ (auth: wb), MQ (auth: wc), NQ (auth: wd), SQ (auth: xa), TQ (auth: xb), UQ (auth: xc), VQ (auth: xd), AR (auth: ya), BR (auth: yb), CR (auth: yc), DR (auth: yd), IR (auth: za), JR (auth: zb), KR (auth: zc), LR (auth: zd)
Chain Length:86
Number of Molecules:240
Biological Source:Aquifex aeolicus

UniProt ID:O66529 EC:2.5.1.78

Ligand Molecules

Primary Citation

An engineered closed-shell, two-component, 480-subunit nucleocapsid

Levasseur, M.D, Terasaka, N, Steinauer, A, Tetter, S, Pfister, S, Meier, B.H, Hilvert, D.Show

Biorxiv ? ? ? (2025)

DOI: 10.1101/2025.10.22.683813

Primary Citation of related structures

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