25QC image
Deposition Date 2026-04-14
Release Date 2026-08-05
Last Version Date 2026-08-05
Entry Detail
PDB ID:
25QC
Keywords:
TRANSFERASE
Title:
Crystal structure of Pseudomonas phage YuA Pplase2 in complex with 5hmdU-DNA and glycine
Biological Source:
Source Organism(s):
Pseudomonas virus Yua (Taxon ID: 462590)
synthetic construct (Taxon ID: 32630)
Expression System(s):
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.20 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
C 2 2 21
25QC validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Amino acid:DNA transferase do
Gene (Uniprot):gp10
Chain IDs:A
Chain Length:292
Number of Molecules:1
Biological Source:Pseudomonas virus Yua
UniProt ID:A9J505 Pfam ID:PF18724
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*GP*AP*TP*(5HU)
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
BOG
CL
EDO
GLY
MG
Primary Citation
Discovery and biosynthesis of a novel diaminopropane-modified thymine in phage DNA
Nucleic Acids Res. ? ? ? (2026)
DOI: 10.1093/nar/gkag763
Primary Citation of related structures
25QC
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