ISDA: 21ZV

Deposition Date 2026-01-05

Release Date 2026-11-04

Last Version Date 2026-11-04

Entry Detail

PDB ID:

21ZV

Keywords:

PROTEIN BINDING

Title:

Cdc48-Ufd1-Npl4 complex processing Ub6 in the presence of ubx2

Biological Source:

Source Organism(s):

Saccharomyces cerevisiae S288C (Taxon ID: 559292)
Homo sapiens (Taxon ID: 9606)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cell division control protein
Gene (Uniprot):CDC48
Mutagens:E588Q
Chain IDs:E (auth: A), G, H (auth: P), I (auth: H), J (auth: I), K (auth: J), L (auth: K)
Chain Length:835
Number of Molecules:7
Biological Source:Saccharomyces cerevisiae S288C

UniProt ID:P25694 EC:3.6.4.6

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin fusion degradation
Gene (Uniprot):UFD1
Chain IDs:A (auth: B)
Chain Length:361
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C

UniProt ID:P53044

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):RPS27A
Chain IDs:B (auth: C), D (auth: L), F (auth: N), N (auth: O)
Chain Length:76
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:P62979

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:UBX domain-containing protein
Gene (Uniprot):UBX2
Chain IDs:C (auth: D)
Chain Length:584
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C

UniProt ID:Q04228

Structures with similar UniProt ID

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Nuclear protein localization
Gene (Uniprot):NPL4
Mutagens:A494F
Chain IDs:M
Chain Length:580
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C

UniProt ID:P33755

Ligand Molecules