ISDA: Search

Structural Entry Filters:

Organisms
- Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (427)
- Thermococcus kodakarensis (70)
- Thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1) (52)
- Thermococcus kodakarensis kod1 (45)
- Synthetic construct (27)
- Pyrococcus kodakaraensis (5)
- Thermococcus kodakaraensis (strain atcc baa-918 / jcm 12380 / kod1) (4)
- Thermococcus kodakaraensis (3)
- Thermococcus kodakaraensis kod1 (2)
Methods
- Alphafold (427)
- X-RAY DIFFRACTION (165)
- ELECTRON MICROSCOPY (12)
Years
- 2026 (2)
- 2025 (15)
- 2024 (6)
- 2023 (2)
- 2022 (1)
- 2021 (9)
- 2020 (18)
- 2019 (5)
- 2018 (9)
- 2017 (11)
- 2016 (27)
- 2015 (10)
- 2014 (8)
- 2013 (11)
- 2012 (7)
- 2010 (5)
- 2009 (4)
- 2008 (4)
- 2007 (13)
- 2006 (4)
- 2005 (1)
- 2004 (1)
- 2001 (2)
- 2000 (1)
- 1999 (1)
Symmetry
- P 21 21 21 (39)
- P 21 21 2 (29)
- P 1 (18)
- P 1 21 1 (17)
- P 41 21 2 (10)
- C 1 2 1 (8)
- P 43 21 2 (7)
- I 2 2 2 (6)
- P 61 2 2 (5)
- P 32 2 1 (4)
- H 3 (4)
- C 2 2 21 (3)
- P 65 2 2 (3)
- P 3 2 1 (3)
- P 61 (2)
- H 3 2 (2)
- P 31 2 1 (2)
- P 2 21 21 (2)
- P 6 (2)
- P 43 2 2 (2)
- P 65 (2)
- P 63 2 2 (1)
- P 42 21 2 (1)
- P 31 (1)
- C 2 2 2 (1)
Ligands
- EDO (18)
- PEG (10)
- PGE (9)
- AMP (8)
- MPD (8)
- IMD (7)
- PG4 (6)
- ATP (5)
- PO4 (5)
- ADP (5)
- CAP (5)
- SF4 (5)
- ASP (4)
- DTP (3)
- ACP (3)
- IOD (3)
- BEN (3)
- FMT (2)
- A1EJC (2)
- NAD (2)
- A1EJE (2)
- XG4 (2)
- OLA (2)
- FL3 (2)
- F3S (2)
Resolution
- 1.0 - 1.5 (4)
- 1.5 - 2.0 (54)
- 2.0 - 2.5 (54)
- 2.5 - 3.0 (35)
- 3.0 - 3.5 (15)
- 3.5 - 4.0 (2)
- 4.5 - 5.0 (1)

Search Count: 604

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9IG7

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Kod-H4 Dna Polymerase Mutant In A Binary Complex With Dna:Dna Containing Two Atna Nucleotides

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.60 Å Release Date: 2026-03-04
Classification: DNA BINDING PROTEIN
Ligands: IMD, GOL, FMT, MES, EDO, MG, MN

9UES

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Crystal Structure Of An Inactive Tksp Mutant In Complex With The Tks Propeptide

Organism: Thermococcus kodakarensis kod1
Method: X-RAY DIFFRACTION
Resolution:3.20 Å Release Date: 2026-02-18
Classification: HYDROLASE
Ligands: CA

9LD3

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The Complex Structure Of K63A/2',3',5'-P-A/Adpr

Organism: Thermococcus kodakarensis
Method: X-RAY DIFFRACTION
Resolution:1.82 Å Release Date: 2025-11-12
Classification: TRANSFERASE
Ligands: GOL, AR6, A1EJC

9LD4

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The Apo-Form Structure Of Tkokpta

Organism: Thermococcus kodakarensis
Method: X-RAY DIFFRACTION
Resolution:3.61 Å Release Date: 2025-11-12
Classification: TRANSFERASE

9LD6

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The Complex Structure Of Tkokpta/Dna/Nad+

Organism: Thermococcus kodakarensis, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.01 Å Release Date: 2025-11-12
Classification: TRANSFERASE/DNA
Ligands: SO4, GOL, NAD

9LDA

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The Complex Structure Of K63A/5'-P-Adpr-Dna

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.33 Å Release Date: 2025-11-12
Classification: TRANSFERASE/DNA
Ligands: IMD, GOL, A1EJJ

9LDC

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The Structure Of Tkokpta/Dna/Adpr Complex-B*

Organism: Thermococcus kodakarensis, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:1.97 Å Release Date: 2025-11-12
Classification: TRANSFERASE/DNA
Ligands: SO4, GOL

9LDD

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The Structure Of Tkokpta/Dna/Adpr Complex-A*

Organism: Thermococcus kodakarensis, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:1.82 Å Release Date: 2025-11-12
Classification: TRANSFERASE/DNA
Ligands: GOL

9LDE

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The Complex Structure Of K63A/2'-P-Adpr-Rna

Organism: Thermococcus kodakarensis
Method: X-RAY DIFFRACTION
Resolution:1.97 Å Release Date: 2025-11-12
Classification: TRANSFERASE
Ligands: GOL, HQG, A3P

9LDF

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The Structure Of Tkokpta/Dna/Appr>P Complex-A

Organism: Thermococcus kodakarensis, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:1.82 Å Release Date: 2025-11-12
Classification: TRANSFERASE/DNA
Ligands: GOL, A1EJE, IMD

9LDG

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The Structure Of Tkokpta/Dna/Appr>P Complex-B

Organism: Thermococcus kodakarensis, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.40 Å Release Date: 2025-11-12
Classification: TRANSFERASE/DNA
Ligands: A1EJE, GOL

9LDH

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The Complex Structure Of Tkokpta/2',3',5'-P-U

Organism: Thermococcus kodakarensis
Method: X-RAY DIFFRACTION
Resolution:1.94 Å Release Date: 2025-11-12
Classification: TRANSFERASE
Ligands: SO4, A1EJD

9LDI

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The Complex Structure Of Tkokpta/2',3',5'-P-A

Organism: Thermococcus kodakarensis
Method: X-RAY DIFFRACTION
Resolution:1.95 Å Release Date: 2025-11-12
Classification: TRANSFERASE
Ligands: SO4, A1EJC, GOL

9EMF

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Kod-H4 Dna Polymerase Mutant In A Binary Complex With Dna:Dna Containing One Hna Nucleotide

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:3.00 Å Release Date: 2025-09-24
Classification: TRANSFERASE
Ligands: MG, NA, GOL, 6BX

9EMH

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Kod-H4 Dna Polymerase Mutant In A Binary Complex With Dna:Dna Containing Two Hna Nucleotides

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.70 Å Release Date: 2025-09-24
Classification: TRANSFERASE
Ligands: IMD, MG, GOL

9EN0

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Kod-H4 Dna Polymerase Mutant In A Unproductive Binary Complex With Dna:Dna Containing Six Hna Nucleotides

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.51 Å Release Date: 2025-09-24
Classification: TRANSFERASE
Ligands: MG, GOL

8S8T

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Kod-H4 Dna Polymerase Mutant In A Binary Complex With Dna/Dna

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:3.00 Å Release Date: 2025-09-17
Classification: TRANSFERASE
Ligands: MG, EDO, GOL

9IX8

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Crystallization And Structural Characterization Of Phosphopentomutase From The Hyperthermophilic Archaeon Thermococcus Kodakarensis

Organism: Thermococcus kodakarensis kod1
Method: X-RAY DIFFRACTION
Resolution:2.39 Å Release Date: 2024-12-18
Classification: ISOMERASE
Ligands: 7PE, GOL

8S84

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Kod-H4 Dna Polymerase Mutant In A Ternary Complex With Dna/Dna And Non-Hydrolyzable Triphosphate

Organism: Thermococcus kodakarensis kod1, Synthetic construct
Method: X-RAY DIFFRACTION
Resolution:2.35 Å Release Date: 2024-11-13
Classification: TRANSFERASE
Ligands: MG, XG4, MN, IMD, GOL

8S87

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Kod-H4 Dna Polymerase Mutant - Apo Structure

Organism: Thermococcus kodakarensis kod1
Method: X-RAY DIFFRACTION
Resolution:1.82 Å Release Date: 2024-11-13
Classification: TRANSFERASE
Ligands: MG, SO4, NA, GOL

Protein Functional Filters:

Enzyme
- Transferases (63)
- Hydrolases (50)
- Lyases (8)
- Oxidoreductases (7)
- Ligases (6)
- Isomerases (5)
Uniprots
- P58502 (16)
- Q5JID0 (13)
- Q5JFX3 (12)
- D0VWU9 (10)
- P77933 (10)
- Q5JIH3 (8)
- Q5JII7 (8)
- Q5JD03 (7)
- Q5JER9 (7)
- O93627 (7)
- O74035 (6)
- Q5JF30 (5)
- Q5JF32 (5)
- Q5JJF4 (5)
- Q5JE88 (5)
- O93623 (5)
- Q5JIZ3 (5)
- Q5JIH4 (5)
- Q5JII0 (5)
- Q5JII1 (5)
- Q5JGL0 (4)
- Q5JE34 (4)
- Q5JIY4 (4)
- Q5JI52 (4)
- Q5JE31 (4)
PFAM
- PF00082 (15)
- PF03104 (13)
- PF00136 (13)
- PF00375 (13)
- PF01885 (11)
- PF00586 (8)
- PF02769 (8)
- PF01155 (7)
- PF02195 (6)
- PF18231 (6)
- PF01939 (6)
- PF21003 (6)
- PF00016 (6)
- PF02788 (6)
- PF00591 (5)
- PF02885 (5)
- PF10609 (5)
- PF01455 (5)
- PF01924 (5)
- PF01351 (5)
- PF00578 (4)
- PF10417 (4)
- PF02272 (4)
- PF01368 (4)
- PF21763 (4)

Structural Entry Filters:

Search Count: 604

Protein Functional Filters:

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