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Protein Name
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Summary
Structure Feature
Experiment
Ligands & Environment
9TGM
pdb_00009tgm
10.2210/pdb9tgm/pdb
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FASTA
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MMCIF
Binary MMCIF
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Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
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Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
MCM2-7 DH bound to Sld3-Sld7
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
Wait time: 30 s Blotting time: 1.5 s Blot force: +2
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
344362
Reported Resolution (Å)
3.6
Resolution Method
FSC 0.143 CUT-OFF
Other Details
For the composite MS map, resolution was estimated with phenix.mtriage, using the unmasked model-map FSC, which gave an FSC(0.143) resolution of 3.6 Angstrom. Final focused refinement particle subsets used to generate composite map (344,362 particles): DH core (66,052 particles) Sld3 MRD1:Mcm6 (63,192 particles) Sld3 MRD2:Mcm4 (166,980 particles) Sld7:Mcm6 (48,138 particles)
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
?
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
GATAN K3 (6k x 4k)
Electron Dose (electrons/Å
2
)
50.4
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS KRIOS
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
3200
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
81000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
PARTICLE SELECTION
Topaz
?
MODEL REFINEMENT
PHENIX
1.21.2_5419
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4.1.14
INITIAL EULER ASSIGNMENT
RELION
4.0
FINAL EULER ASSIGNMENT
cryoSPARC
4.6.2
CLASSIFICATION
cryoSPARC
4.6.2
RECONSTRUCTION
cryoSPARC
4.6.2
RECONSTRUCTION
RELION
4.0
RECONSTRUCTION
PHENIX
1.21.2_5419
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
?
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