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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
9QVX
pdb_00009qvx
10.2210/pdb9qvx/pdb
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FASTA
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Structure Factors
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Validation File (XML)
Validation File (CIF)
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Binary MMCIF Zipped(.gz)
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Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
Neuro2a expressing Q150-GFP aggregate
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE-PROPANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
43227
Reported Resolution (Å)
3.9
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
?
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
FEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å
2
)
2
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
TFS KRIOS
Minimum Defocus (nm)
3000
Maximum Defocus (nm)
5000
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
?
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
For dataset 2, 410 tilt series were collected on a Titan Krios G4 instrument at 300 kV equipped with a Selectris X energy filter operating at zero-loss with a slit width of 10 eV, and a Falcon 4i camera (Thermo). Low-magnification images were taken at 11500x (object pixel size 2.13 nm) to generate lamella overviews. Tilt series were recorded at 1.89 A pixel size using the Tomography 5 (Thermo) in EER file format, with a dose-symmetric tilt scheme. The tilt series were collected with a 3 degree tilt increment with an angular range of ~120 degrees, and with cumulative dose of 80-120 electrons/A^2. Targeted defocus was in the range of -5 to -3 um.
Imaging Experiment
Task
Software Package
Version
IMAGE ACQUISITION
FEI tomography
9.03
MODEL REFINEMENT
PHENIX
?
RECONSTRUCTION
RELION
4.0
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
NONE
?
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