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PDB Id
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Source Organism
Host Organism
Protein Name
Method
Author's Name
Summary
Structure Feature
Experiment
Ligands & Environment
5LDW
pdb_00005ldw
10.2210/pdb5ldw/pdb
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Structure Factors
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Validation File (XML)
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ELECTRON MICROSCOPY
Sample
Bovine respiratory Complex I
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
The specimen was vitrified in an environmental plunge-freeze apparatus present in a cold room, blot for 12-15 seconds after the diameter of the blotted meniscus ceases to spread and plunged.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
48033
Reported Resolution (Å)
4.27
Resolution Method
FSC 0.143 CUT-OFF
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
RECIPROCAL
Refinement Protocol
OTHER
Refinement Target
Maximum likelihood
Overall B Value
83.049
Fitting Procedure
?
Details
?
Data Acquisition
Detector Type
FEI FALCON II (4k x 4k)
Electron Dose (electrons/Å
2
)
35
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
?
Maximum Defocus (nm)
?
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
59000
Calibrated Magnification
105263
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
IMAGE ACQUISITION
EPU
?
CTF CORRECTION
CTFFIND
4
MODEL FITTING
Coot
0.8.3
MODEL REFINEMENT
REFMAC
5.8.0134
FINAL EULER ASSIGNMENT
RELION
1.4
CLASSIFICATION
RELION
1.4
RECONSTRUCTION
RELION
1.4
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
NONE
CTF correction wad done per particle after the CTF was estimated on the whole micrograph.
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