9ZZO image
Deposition Date 2026-01-07
Release Date 2026-06-17
Last Version Date 2026-06-17
Entry Detail
PDB ID:
9ZZO
Title:
MP1104-bound Kappa Opioid Receptor in complex with beta-arrestin1
Biological Source:
Source Organism(s):
Lama glama (Taxon ID: 9844)
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kappa-type opioid receptor,Va
Gene (Uniprot):AVPR2, OPRK1
Chain IDs:C (auth: A)
Chain Length:341
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 1B of Beta-arrestin-1
Gene (Uniprot):ARRB1
Chain IDs:B (auth: C)
Chain Length:387
Number of Molecules:1
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nanobody 32
Chain IDs:A (auth: E)
Chain Length:124
Number of Molecules:1
Biological Source:Lama glama
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fab30 heavy chain
Chain IDs:D (auth: H)
Chain Length:241
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fab30 light chain
Chain IDs:E (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP C SER modified residue
TPO C THR modified residue
Primary Citation
Structural dynamics of kappa opioid receptor interactions with beta-arrestin 1.
Nat Commun ? ? ? (2026)
PMID: 42243110 DOI: 10.1038/s41467-026-73968-3

Abstact

Opioid receptors signal through Gi/o protein and beta-arrestin pathways that mediate distinct effects of opiate drugs. While opioid binding and G protein activation are well studied, beta-arrestin recruitment remains poorly understood. Here, we determine the complex structure of the kappa opioid receptor (KOR) with beta-arrestin1 (betaarr1) at 2.60 A resolution using cryogenic electron microscopy. Structural and mass spectrometry analyses reveal multiple phosphorylation sites and a phospholipid-binding site that specifically enhances arrestin recruitment. The KOR-betaarr1 complex adopts a core interaction and exhibits notable differences from other GPCR-betaarr1 complexes. Comparisons with the structures of KOR-Nb39 and KOR-Gi1 complexes also reveal distinct structural features in the orthosteric binding site and the KOR-transducer interface that affect signaling bias. Using extensive 3D variation analysis and molecular dynamics simulations, we identify a range of conformational dynamics in both the receptor and betaarr1, suggesting an allosteric pathway for arrestin's entry and exit.

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Primary Citation of related structures
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