9ZYT image
Deposition Date 2026-01-06
Release Date 2026-04-22
Last Version Date 2026-06-03
Entry Detail
PDB ID:
9ZYT
Keywords:
Title:
Crystal Structure of BRD4 Bromodomain BD1 in Complex with Small Molecule PLX-3618
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.20
R-Value Work:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bromodomain-containing protei
Gene (Uniprot):BRD4
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:124
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery and Structural Optimization of BRD4-Selective Monovalent Direct Degraders.
Acs Med.Chem.Lett. 17 1106 1113 (2026)
PMID: 42157816 DOI: 10.1021/acsmedchemlett.6c00022

Abstact

Targeted protein degradation (TPD) via the ubiquitin-proteasome system (UPS) is a rapidly advancing drug discovery strategy that enables the selective elimination of pathogenic proteins using small molecules. Here, we report the discovery of BRD4-selective monovalent direct degraders acting through DCAF11, identified by ultrahigh-throughput screening and subsequently optimized through a structure-guided medicinal chemistry campaign. Structure-activity relationship (SAR) studies support a direct degrader mechanism and culminated in the identification of the orally bioavailable compound PLX-4104. In vitro, PLX-4104 induces rapid, complete, and selective degradation of BRD4 and exhibits potent antiproliferative activity in acute myeloid leukemia (AML) models. In vivo, PLX-4104 treatment resulted in complete tumor regression in the AML MV-4-11 xenograft model. Collectively, this lays the groundwork for the rational development of monovalent direct degraders with applications extending beyond BRD4.

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Primary Citation of related structures
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