9ZDL image
Deposition Date 2025-11-25
Release Date 2026-08-05
Last Version Date 2026-08-05
Entry Detail
PDB ID:
9ZDL
Keywords:
Title:
A6-A11 diselenide glargine insulin
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Insulin A chain
Gene (Uniprot):INS
Chain IDs:A
Chain Length:0
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Insulin A chain
Gene (Uniprot):INS
Chain IDs:B
Chain Length:0
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Damping amyloid-associated conformational fluctuations in a protein by an engineered diselenide bridge.
Protein Sci. 35 e70697 e70697 (2026)
PMID: 42478539 DOI: 10.1002/pro.70697

Abstact

Polypeptide cross-beta assembly, characteristic of diverse proteotoxic diseases, defines a general thermodynamic ground state and limits the shelf lives of peptide- and protein therapeutics. A model is provided by insulin. Although the hormone contains a predominance of alpha-helix, its fibrils exhibit cross-beta reorganization. In the real world, aggregation-coupled fibrillation of insulin underlies its degradation above room temperature, impairing activity and imposing a complex global "cold chain" of transport and storage. Here, we describe biophysical protection of an insulin analog at an elevated temperature by an engineered diselenide bridge. Our studies focused on insulin glargine, the active ingredient of long-acting formulations in broad clinical use. Insoluble in a subcutaneous depot due to its shifted isoelectric point, the analog dissolves at pH 4.0 and so, unlike neutral formulations of the wild-type hormone, is unprotected by zinc-mediated hexamer assembly. Whereas at 37 degrees C the fibrillation lag time of insulin glargine is accelerated by fourfold relative to WT insulin, such instability is circumvented by pairwise substitution of Cys(A6) and Cys(A11) by selenocysteine. Protection from fibrillation correlates with augmented resistance to pepsin cleavage, guanidine denaturation, and thermal unfolding. Although NMR structures of insulin glargine and its diselenide analog are similar, damping of conformational fluctuations is evidenced by patterns of (1)H-NMR chemical shifts, helix-associated NOEs, amide-resonance line widths, and (1)H-(2)H amide-proton exchange. Such damping is discussed in relation to molecular dynamics simulations. Demonstrating a likely mechanistic relationship between fibrillation and native-state conformational fluctuations, our findings highlight the translational promise of "dynamic engineering" via nonstandard mutagenesis.

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Primary Citation of related structures
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