9ZD6 image
Deposition Date 2025-11-24
Release Date 2026-01-14
Last Version Date 2026-08-26
Entry Detail
PDB ID:
9ZD6
Keywords:
HYDROLASE/DNA
Title:
Bacterial interstrand DNA crosslink glycosylase AlkX/YcaQ bound to DNA
Biological Source:
Source Organism(s):
Thermobifida fusca (Taxon ID: 2021)
DNA molecule (Taxon ID: 2853804)
Expression System(s):
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
9ZD6 validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic protein
Gene (Uniprot):Tfu_0254
Chain IDs:A, B
Chain Length:402
Number of Molecules:2
Biological Source:Thermobifida fusca
UniProt ID:Q47TC5
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*GP*AP*GP*TP*CP*
Chain IDs:C
Chain Length:18
Number of Molecules:1
Biological Source:DNA molecule
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*TP*GP*GP*TP*CP*
Chain IDs:D
Chain Length:18
Number of Molecules:1
Biological Source:DNA molecule
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A, B MET modified residue
Ligand Molecules
EDO
IOD
Primary Citation
DNA binding and lesion recognition by the bacterial interstrand DNA crosslink glycosylase AlkX.
Embo Rep. 27 3173 3188 (2026)
PMID: 42104011 DOI: 10.1038/s44319-026-00785-6
Primary Citation of related structures
9ZD6
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