9ZBT image
Deposition Date 2025-11-21
Release Date 2026-05-27
Last Version Date 2026-05-27
Entry Detail
PDB ID:
9ZBT
Keywords:
Title:
Visualization of PriA/PriB/DnaT complexes reveals mechanisms governing structure-specific assembly of the DNA replication restart primosome
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.22 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replication restart protein P
Gene (Uniprot):priB
Chain IDs:B (auth: A), C (auth: B)
Chain Length:104
Number of Molecules:2
Biological Source:Escherichia coli K-12
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replication restart protein D
Gene (Uniprot):dnaT
Chain IDs:A (auth: D)
Chain Length:179
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (33-MER)
Chain IDs:D (auth: G)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Primosomal protein N'
Gene (Uniprot):priA
Chain IDs:E (auth: H)
Chain Length:732
Number of Molecules:1
Biological Source:Escherichia coli K-12
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (33-MER)
Chain IDs:F (auth: J)
Chain Length:40
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (11-MER)
Chain IDs:G (auth: Z)
Chain Length:15
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Visualization of the complete preprimosome reveals the structural mechanisms governing DNA replication restart.
Nat Commun ? ? ? (2026)
PMID: 42140935 DOI: 10.1038/s41467-026-73239-1

Abstact

Replication restart pathways reinitiate DNA replication processes following their premature termination. In Escherichia coli, this essential process begins with regulated assembly of the preprimosome complex, comprising the PriA, PriB, and DnaT proteins, onto an abandoned replication fork. Here, we present two distinct preprimosome structures. One represents an intermediate stage in preprimosome assembly with a single DnaT C-terminal domain (DnaT(CTD)) bound to PriA/PriB/DNA. The second captures the mature preprimosome, in which filamentation of multiple DnaT(CTD) molecules catalyzes the handoff of the single-stranded lagging-strand DNA from PriB to DnaT. The DnaT N-terminal domain forms a separate, independent oligomer in the mature structure. Taken together, our results detail the molecular mechanisms underlying replication restart initiation and regulation and suggest mechanistic similarities between DnaT and the canonical initiator protein DnaA.

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Primary Citation of related structures
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