9YUF image
Deposition Date 2025-10-22
Release Date 2026-07-01
Last Version Date 2026-07-01
Entry Detail
PDB ID:
9YUF
Title:
PKR kinase domain - Dabrafenib complex
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.28
R-Value Work:
0.25
Space Group:
P 31
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Interferon-induced, double-st
Gene (Uniprot):EIF2AK2
Chain IDs:A, B, C, D
Chain Length:283
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural Transformation of a BRAF Inhibitor into a Selective PKR Inhibitor.
J.Med.Chem. ? ? ? (2026)
PMID: 42324916 DOI: 10.1021/acs.jmedchem.5c03664

Abstact

The RNA-dependent protein kinase PKR regulates responses to viral infection and has emerging roles in memory formation. Inhibition of PKR enhances long-term memory in mice and reverses cognitive decline in models of aging and Alzheimer's disease. However, existing PKR inhibitors have poor selectivity and pharmacokinetic properties, limiting therapeutic development. Here, we describe the transformation of dabrafenib, an FDA-approved oncogenic BRAF inhibitor, into a selective PKR inhibitor. Dabrafenib was identified by screening as a promising PKR lead with similar potency against BRAF and PKR. Guided by X-ray cocrystal structures, we introduced modifications that removed BRAF while retaining PKR inhibition. This optimization yielded OICR-403184, which shows markedly reduced BRAF activity, improved PKR selectivity (IC(50) > 10,000 nM against BRAF vs IC(50) = 263 nM against PKR in vitro), and minimal activity against related eIF2alpha kinases in cells. These findings establish OICR-403184 as a promising chemical starting point for further PKR inhibitor optimization.

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Chemical

Disease

Primary Citation of related structures
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