9YTA image
Deposition Date 2025-10-20
Release Date 2026-07-29
Last Version Date 2026-07-29
Entry Detail
PDB ID:
9YTA
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody L52 with BA.5 RBD and SP1-77 Fab complex
Biological Source:
Source Organism(s):
Severe acute respiratory syndrome coronavirus (Taxon ID: 2901879)
Mus musculus (Taxon ID: 10090)
Expression System(s):
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.27 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9YTA validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A
Chain Length:676
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:SP1-77 Fab Heavy Chain
Chain IDs:B (auth: D)
Chain Length:451
Number of Molecules:1
Biological Source:Mus musculus
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:SP1-77 Fab Light Chain
Chain IDs:C (auth: E)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:L52 Fab Heavy Chain
Chain IDs:D (auth: F)
Chain Length:449
Number of Molecules:1
Biological Source:Mus musculus
Structural Superimposition Protein Blast
Polymer Type:polypeptide(L)
Molecule:L52 Fab Light Chain
Chain IDs:E (auth: G)
Chain Length:214
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
NAG
Primary Citation
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody L52 with BA.5 RBD and SP1-77 Fab complex
To Be Published ? ? ? (?)
Primary Citation of related structures
9YTA
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