9YRM image
Deposition Date 2025-10-16
Release Date 2026-06-10
Last Version Date 2026-06-10
Entry Detail
PDB ID:
9YRM
Keywords:
Title:
CryoEM Structure of VPS13 protein, 1-1390 from C. thermophilum, in complex with calmodulin
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.75 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calmodulin-1
Gene (Uniprot):CALM1
Chain IDs:A
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Intermembrane lipid transfer
Gene (Uniprot):VPS13
Chain IDs:B
Chain Length:1417
Number of Molecules:1
Biological Source:Thermochaetoides thermophila
Ligand Molecules
Primary Citation
Insights into the regulation of VPS13 family bridge-like lipid transfer proteins from the structure of VPS13C.
Biorxiv ? ? ? (?)
PMID: 41292763 DOI: 10.1101/2025.11.10.687702

Abstact

Bridge-like lipid transfer proteins (BLTPs) play central roles in redistributing lipids from their primary site of synthesis in the endoplasmic reticulum to other organelles. They comprise bridge-domains spanning between organelles at contact sites that allow lipids to transit the cytosol between adjacent membranes. The assembly of BLTPs into complexes with adaptor proteins enables their lipid transfer ability. To address the mechanisms underlying assembly and regulation of BLTP complexes, we used cryo-EM to resolve the structure of one such BLTP, the Parkinson's protein VPS13C, at near-atomic resolution. The structure identifies a lipid-transfer-nonpermissive conformation, where the built-in C-terminal VAB adaptor module blocks the end of the lipid transfer bridge, interfering with lipid delivery. We also identify calmodulin, central to calcium signaling, as a VPS13 partner, suggesting calcium regulation of VPS13 function. Altogether, this structure of intact VPS13C serves as starting point to understand its regulation and, more broadly, that of other BLTPs.

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Primary Citation of related structures
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