9YPI image
Deposition Date 2025-10-14
Release Date 2026-05-06
Last Version Date 2026-05-20
Entry Detail
PDB ID:
9YPI
Title:
MboA HDO apo structure
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mangotoxin biosynthesis prote
Gene (Uniprot):BW686_01200
Chain IDs:A, B, C, D
Chain Length:250
Number of Molecules:4
Biological Source:Pseudomonas syringae
Primary Citation
Discovery of a Structurally Distinct Acetylenase in the Biosynthesis of Mangotoxin.
J.Am.Chem.Soc. 148 18724 18732 (2026)
PMID: 42048656 DOI: 10.1021/jacs.5c21680

Abstact

Amino acids, peptides, and proteins play pivotal roles in medicine, materials, and catalysis, with their functions largely dictated by their side-chain functionality. Recent studies have shown that heme oxygenase-like domain-containing oxidases (HDOs) catalyze a broad range of interesting chemical reactions on amino acids and their derivatives to produce structurally diverse target structures. Using a bioinformatics approach, the mangotoxin biosynthetic operon was found to house an unannotated HDO, MboA, along with a dedicated redox partner, MboB. We show that MboA catalyzes alkyne formation by iterative desaturations on the side-chain of a peptide substrate, where the transformation between alkene and alkyne is gated by MboB. The crystal structure of Fe(II)(2)-MboA reveals an unexpectedly short Fe-Fe distance, suggesting that the activation of strong C(sp(2))-H bonds may utilize a mechanism distinct from other HDOs and expands the scope of known HDO chemistry.

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Primary Citation of related structures
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