9YNX image
Deposition Date 2025-10-12
Release Date 2026-03-18
Last Version Date 2026-04-08
Entry Detail
PDB ID:
9YNX
Keywords:
VIRAL PROTEIN
Title:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Biological Source:
Source Organism(s):
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9YNX validation report missing
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A, B
Chain Length:205
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF09408
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fab-14 heavy chain
Chain IDs:C (auth: D), E (auth: F)
Chain Length:235
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:9YNX
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Fab-14 light chain
Chain IDs:D (auth: E), F (auth: G)
Chain Length:213
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:9YNX
Ligand Molecules
NAG
Primary Citation
Neutralization of SARS-CoV-2 by IgM-14 via engagement of two distinct spike epitopes.
PLoS Pathog. 22 e1014071 e1014071 (2026)
PMID: 41880376 DOI: 10.1371/journal.ppat.1014071
Primary Citation of related structures
9YNX
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