ISDA: 9YNM

Deposition Date 2025-10-10

Release Date 2026-07-15

Last Version Date 2026-07-15

Entry Detail

PDB ID:

9YNM

Keywords:

DE NOVO PROTEIN

Title:

Crystal structure of de novo cysteine protease (Dokki_15 WT apo)

Biological Source:

Source Organism(s):

synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.56 Å

R-Value Free:

0.20

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Structural Superimposition Protein Blast

Polymer Type:polypeptide(L)
Molecule:Dokki_15 WT apo
Chain IDs:A
Chain Length:196
Number of Molecules:1
Biological Source:synthetic construct

Primary Citation

Computational design of cysteine proteases.

Choi, H, Coventry, B, Bauer, M, Venkatesh, P, Chen, A, Kim, D, Bera, A.K, Kang, A, Nguyen, H, Joyce, E, Shankaran, B, Thompson, T.R, Gershon, J.M, Shida, A.F, Lee, G.R, Hilvert, D, Pellock, S.J, Baker, D.Show

Biorxiv ? ? ? (2025)

PMID: 41332739 DOI: 10.1101/2025.11.21.689808

Primary Citation of related structures

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