9YHQ image
Deposition Date 2025-09-30
Release Date 2026-05-27
Last Version Date 2026-05-27
Entry Detail
PDB ID:
9YHQ
Title:
AJ09-83 Fab in complex with HIV-1 Env 5MUT-3fill SOSIP
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein gp41
Gene (Uniprot):env
Chain IDs:A, B, C
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:D (auth: E), E (auth: F), F (auth: G)
Chain Length:479
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AJ09-83 Fab heavy chain
Chain IDs:G (auth: H), H (auth: J), K (auth: M)
Chain Length:128
Number of Molecules:3
Biological Source:Macaca mulatta
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AJ09-83 Fab light chain
Chain IDs:I (auth: K), J (auth: L), L (auth: N)
Chain Length:112
Number of Molecules:3
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

A major obstacle confronting HIV-1 vaccine and cure research is the lack of an outbred animal model for rapid and consistent induction of broadly neutralizing antibodies (bNAbs). We designed an epitope-focused simian-human immunodeficiency virus (SHIV.5MUT) that elicited broad and potent V3-glycan-targeted antibodies within a year of infection in 14 of 22 macaques compared with 0 of 14 control animals. SHIV.5MUT elicited bNAbs by a two-step mechanism, inducing an initial wave of V1-directed antibodies that selected for Envs with shortened, hypoglycosylated V1 loops, which in turn primed V3-glycan bNAb precursors. Rhesus bNAbs were immunogenetically and structurally diverse, closely resembling human V3-glycan bNAbs. Env-bNAb coevolution revealed a diverse repertoire of bNAb precursors and the Env variants that matured them, yielding a molecular blueprint for vaccine design.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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