9Y41 image
Deposition Date 2025-09-02
Release Date 2026-05-06
Last Version Date 2026-05-20
Entry Detail
PDB ID:
9Y41
Title:
Crystal structure of hemagglutinin head domain from H1N1 Influenza A virus A/Victoria/2570/2019 bound to the 49_C09 antibody
Biological Source:
Source Organism(s):
Influenza A virus (Taxon ID: 11320)
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.89 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin
Gene (Uniprot):HA
Chain IDs:A (auth: G), B (auth: C)
Chain Length:223
Number of Molecules:2
Biological Source:Influenza A virus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antibody 49_C09 heavy chain
Chain IDs:C (auth: H), E (auth: A)
Chain Length:228
Number of Molecules:2
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antibody 49_C09 light chain
Chain IDs:D (auth: L), F (auth: B)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Childhood immunological imprinting of cross-subtype antibodies targeting the hemagglutinin head domain of influenza viruses.
Cell Host Microbe 34 873 887.e11 (2026)
PMID: 42049037 DOI: 10.1016/j.chom.2026.04.004

Abstact

Influenza virus cross-subtype antibodies targeting epitopes in the hemagglutinin (HA) head are rare because these epitopes are variable between influenza virus subtypes. We found that a large proportion of monoclonal antibodies (mAbs) isolated from individuals immunized with the 2021-22 seasonal influenza vaccine bound to an epitope on the HA head of both the H1N1 vaccine strain and H3N2 strains from the mid-1990s. The unmutated common ancestors of many of these mAbs reacted to both the 1990s H3s and the 2021-22 H1 vaccine strain. These cross-subtype antibodies were also found in polyclonal sera, but only among individuals born in the 1990s. Ferrets sequentially exposed to a 1990s H3N2 virus and contemporary influenza vaccine also produced H1/H3 cross-reactive antibodies. Recently, H1N1 viruses have acquired a substitution that abrogates the binding of these antibodies. Together, our study demonstrates how prior influenza virus exposures can influence the specificity of antibodies elicited by entirely different influenza virus subtypes.

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Chemical

Disease

Primary Citation of related structures
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