9Y1X image
Deposition Date 2025-08-31
Release Date 2026-02-25
Last Version Date 2026-03-04
Entry Detail
PDB ID:
9Y1X
Keywords:
Title:
Crystal structure of NRas-G12D in complex with GDP and IACS-56676
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GTPase NRas
Gene (Uniprot):NRAS
Mutagens:G12D, C118S
Chain IDs:A, B
Chain Length:171
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure-Guided Development of NRAS G12D Inhibitors Based on a 5‐Azaindole Core.
Acs Med.Chem.Lett. 17 425 432 (2026)
PMID: 41704364 DOI: 10.1021/acsmedchemlett.5c00647

Abstact

NRAS G12D mutations are predominantly found in melanoma and hematologic malignancies, and there is an unmet need for developing targeted therapies against this oncogene. Herein, we describe the structure-guided development of IACS-56676, a selective and potent NRAS G12D inhibitor useful as a tool compound for further studies of NRAS biology. The development process revealed key insights into gaining selectivity between NRAS and KRAS proteins. Notably, stabilization of the p-loop and substitution toward Leu 95 while maintaining key interactions with Asp12, Gly60, and Asp69 improved NRAS G12D potency and resulted in selectivity against wild-type KRAS/non-responder.

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Disease

Primary Citation of related structures
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